CuGenDBv2

Gene ID	Cucsat.G2695
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Genome location	ctg1006:811718..813537
RNA-Seq Expression	Cucsat.G2695
Synteny	Cucsat.G2695
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040790.1 photosystem II D1 precursor processing protein PSB27-H2 [Cucumis melo var. makuwa]

1.17e-130

93.2

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Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
        MAAFI AKICP TI TLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTFNNGLTPSSA AEEMPNNMEEEDNGVIGTIKSIFDPNE+TK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
        SGK+LPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD

Query:  KVEESL
        K E SL
Subjt:  KVEESL

XP_008447146.1 PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo]

2.02e-131

93.69

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Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
        MAAFI AKICP TISTLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTFNNGLTPSSA AEEMPNNMEEEDNGVIGTIKSIFDPNE+TK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
        SGK+LPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD

Query:  KVEESL
        K E SL
Subjt:  KVEESL

XP_011659022.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X1 [Cucumis sativus]

5.03e-141

100

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Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
        MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
        SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD

Query:  KVEESL
        KVEESL
Subjt:  KVEESL

XP_011659023.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X2 [Cucumis sativus]

1.90e-138

99.51

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Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
        MAAFIHAKICPTTISTLDRSLISEYG KLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
        SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD

Query:  KVEESL
        KVEESL
Subjt:  KVEESL

XP_038875361.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida]

8.72e-119

88.35

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Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
        MAAFI A ICPTTISTLDR+L SE G KL SRS+VVLP QEVCRRHL+ +GMSLVVFLT NNGLTPSSA+AEE PN+ EEEDNGVIGTIKSIFDPNEKTK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
        SGK+LPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG++TVV+EESYVVLEKAI+SLAGFYAKAGPSAPLPEAVKSDILDDLD
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD

Query:  KVEESL
        K EE L
Subjt:  KVEESL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K400 Uncharacterized protein

2.43e-141

100

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Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
        MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
        SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD

Query:  KVEESL
        KVEESL
Subjt:  KVEESL

A0A1S3BG68 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

9.79e-132

93.69

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Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
        MAAFI AKICP TISTLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTFNNGLTPSSA AEEMPNNMEEEDNGVIGTIKSIFDPNE+TK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
        SGK+LPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD

Query:  KVEESL
        K E SL
Subjt:  KVEESL

A0A5D3D0K6 Photosystem II D1 processing protein PSB27-H2

5.66e-131

93.2

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Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
        MAAFI AKICP TI TLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTFNNGLTPSSA AEEMPNNMEEEDNGVIGTIKSIFDPNE+TK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
        SGK+LPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD

Query:  KVEESL
        K E SL
Subjt:  KVEESL

A0A6J1CCV0 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

7.04e-109

80.58

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Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
        MAAF+ AKICP T S+LDR   SE G KL SRS+VVLP QEVCRR L+ NGMSLVVFL FNNG  P  A+AEE PN+ +EEDNGV+G IKSIFDPNE+TK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
        SGK+LPKAYLKSARE+VKTLRES+QEDPKDGAKFRRTADAAKESIRDYLSNWLG+QTV QEESY  LEKAIRSLA FYAKAGPSAPLPEAVKSDIL+DLD
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD

Query:  KVEESL
        K EE L
Subjt:  KVEESL

A0A6J1H448 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

7.12e-111

83.01

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Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK
        M AFI AKICP TISTLDR + SE G KL SRS+VVLP QE+CRR L+ NGMS V FLTFNN LTP  A+AEEMPN+ EEE+NGVIGTIKSIFDPNE+TK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
        SGK+LPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q VVQEESY VLEKAIRSLAGFYAKAGPSAPLPE VKSDIL+DLD
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD

Query:  KVEESL
        K EE L
Subjt:  KVEESL

SwissProt top hits

e value

%identity

Alignment

P74367 Photosystem II lipoprotein Psb27

1.6e-05

30.19

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Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD
        SG  L   Y +    V+ TLRE++ + P+D    +   D A+  I DY+S +  K      +S+  ++ A+ SLAG+Y   G + P+PE +K  +  +  
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLD

Query:  KVEESL
        + E S+
Subjt:  KVEESL

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

2.9e-47

69.29

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Query:  SSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVV
        S  QA+     ++E + GV+G  K++FDPNE+TKSGK LPKAYLKSAREVVKT+RESL+E+PKD AKFRR+ADAAKESIRDYLSNW G++TV  EESYV 
Subjt:  SSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVV

Query:  LEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEESL
        LE  IR+LA FY+KAGPSAPLP+ VK++ILDDL+K EE L
Subjt:  LEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEESL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

8.2e-05

26.47

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Query:  YLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGK----QTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEE
        Y+K    V+  +R +L     D       ADA  E +R+  ++W+ K    + ++ + S+  +  A+ +++G Y   GP+AP+P   K+ IL++++  E+
Subjt:  YLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGK----QTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEE

Query:  SL
        +L
Subjt:  SL

AT1G05385.1 photosystem II 11 kDa protein-related

2.1e-48

69.29

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Query:  SSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVV
        S  QA+     ++E + GV+G  K++FDPNE+TKSGK LPKAYLKSAREVVKT+RESL+E+PKD AKFRR+ADAAKESIRDYLSNW G++TV  EESYV 
Subjt:  SSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVV

Query:  LEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEESL
        LE  IR+LA FY+KAGPSAPLP+ VK++ILDDL+K EE L
Subjt:  LEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEESL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTGCATTTATTCATGCAAAGATCTGCCCTACGACTATTTCAACATTGGATAGAAGCTTAATAAGTGAATATGGTCGTAAACTACCATCCAGGTCTCGAGTAGTGCT
TCCATATCAAGAAGTTTGTAGACGTCATTTGGTATGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTTCGGCCCAGGCCGAAGAAA
TGCCAAATAACATGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAAAAAACCAAATCAGGGAAAATATTGCCAAAGGCTTACTTG
AAGTCTGCAAGGGAGGTGGTGAAAACGCTGCGTGAGTCATTGCAGGAAGACCCCAAGGATGGTGCTAAATTTAGACGAACTGCGGATGCTGCAAAAGAATCCATTCGTGA
CTATTTAAGCAATTGGTTGGGGAAACAAACAGTTGTTCAAGAGGAATCTTACGTTGTATTAGAGAAAGCAATTAGGTCGTTGGCAGGATTTTATGCAAAGGCTGGGCCAT
CTGCGCCACTGCCAGAAGCGGTTAAATCTGATATTCTGGATGATTTGGATAAGGTTGAAGAATCCTTGTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYL
KSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEESL

Cucsat.G2695 (gene) of Cucumber (B10) v3 genome