CuGenDBv2

Gene ID	Cucsat.G2789
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Thioredoxin-like protein
Genome location	ctg1041:2050008..2058385
RNA-Seq Expression	Cucsat.G2789
Synteny	Cucsat.G2789
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005681 - spliceosomal complex (cellular component) GO:0005682 - U5 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domains	IPR004123 - Dim1 family IPR036249 - Thioredoxin-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575968.1 Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia]

3.54e-71

94.12

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        HTKW+GAFH+KQDFIDVVE
Subjt:  HTKWVGAFHQKQDFIDVVE

XP_004139666.1 thioredoxin-like protein 4B [Cucumis sativus]

1.58e-74

100

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        HTKWVGAFHQKQDFIDVVE
Subjt:  HTKWVGAFHQKQDFIDVVE

XP_008447285.1 PREDICTED: thioredoxin-like protein 4B [Cucumis melo]

3.71e-73

97.48

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEE+QVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        HTKWVGAFHQKQ+FIDVVE
Subjt:  HTKWVGAFHQKQDFIDVVE

XP_022152114.1 thioredoxin-like protein 4B [Momordica charantia]

6.13e-72

94.96

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        HTKW+GAFHQKQDFIDVVE
Subjt:  HTKWVGAFHQKQDFIDVVE

XP_022953679.1 thioredoxin-like protein 4B [Cucurbita moschata]

3.54e-71

94.12

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        HTKW+GAFH+KQDFIDVVE
Subjt:  HTKWVGAFHQKQDFIDVVE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BH38 thioredoxin-like protein 4B

1.80e-73

97.48

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEE+QVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        HTKWVGAFHQKQ+FIDVVE
Subjt:  HTKWVGAFHQKQDFIDVVE

A0A6J1DGN8 thioredoxin-like protein 4B

2.97e-72

94.96

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        HTKW+GAFHQKQDFIDVVE
Subjt:  HTKWVGAFHQKQDFIDVVE

A0A6J1GQC5 thioredoxin-like protein 4B

1.71e-71

94.12

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        HTKW+GAFH+KQDFIDVVE
Subjt:  HTKWVGAFHQKQDFIDVVE

A0A6J1JT18 thioredoxin-like protein 4B

3.45e-71

93.28

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        HTKW+GAFH+KQDFIDVVE
Subjt:  HTKWVGAFHQKQDFIDVVE

A0A6P4ATD0 thioredoxin-like protein 4B

2.56e-66

87.39

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLL TLTKK EVDS+I+DTIDKVL+LRFGR SDSVCLLLDD+L+K AREVSKFA++ALVDIDSE++QVYV YFDITLIPST+FFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        HTKWVGAFHQKQDFIDVVE
Subjt:  HTKWVGAFHQKQDFIDVVE

SwissProt top hits

e value

%identity

Alignment

P83876 Thioredoxin-like protein 4A

5.5e-12

33.61

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA + LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        + K   A   KQ+ +D++E
Subjt:  HTKWVGAFHQKQDFIDVVE

P83877 Thioredoxin-like protein 4A

5.5e-12

33.61

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA + LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        + K   A   KQ+ +D++E
Subjt:  HTKWVGAFHQKQDFIDVVE

Q8BUH1 Thioredoxin-like protein 4B

3.3e-33

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MS+LL  LT K EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A++ LVD+D     VY +YFDI+ IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVEV
        HTK+VG+F  KQDFID++EV
Subjt:  HTKWVGAFHQKQDFIDVVEV

Q9FE62 Thioredoxin-like protein YLS8

7.2e-12

36.36

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGT
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA + LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGT

Query:  ADHTKWVGAFHQKQDFIDVVE
         ++ K   A   KQ+FID++E
Subjt:  ADHTKWVGAFHQKQDFIDVVE

Q9NX01 Thioredoxin-like protein 4B

1.9e-33

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MS+LL  LT K EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A++ LVD+D  +  VY +YFDI+ IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVEV
        HTK+VG+F  KQDFID++EV
Subjt:  HTKWVGAFHQKQDFIDVVEV

Arabidopsis top hits

e value

%identity

Alignment

AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP

1.1e-50

79.83

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLL+TLT K E+D +IRDTID+VL+LRFGR SD+VCL  D+ILAK  R+VSKFA VALVD+DSE++QVYVKYFDITL PST+FFFNAHHMK+DSGTAD
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWVGAFHQKQDFIDVVE
        HTKWVGAFH KQDFIDVVE
Subjt:  HTKWVGAFHQKQDFIDVVE

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP

5.1e-13

36.36

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Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGT
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA + LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGT

Query:  ADHTKWVGAFHQKQDFIDVVE
         ++ K   A   KQ+FID++E
Subjt:  ADHTKWVGAFHQKQDFIDVVE

Sequences

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CDS sequence

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TATTGTGGCACTTTTATCATTACATGCTTGTTTTTCACCCCGGCTAGGGAATTCGGCGGCGGCGCAGCATCGGCGTCAATCCTCGACGCTACCAGCAAGCTCCGTTGGTG
GTGGCGCTTCACAGCAAGGCAAAGGAGGATGAGCTATCTTCTACGAACCTTAACAAAGAAGGGAGAGGTGGATTCCCTTATTAGGGATACGATTGATAAGGTCCTAATTC
TCCGATTTGGGCGGTGTTCTGATTCAGTTTGTCTCCTCCTTGATGACATTCTTGCTAAGTGCGCACGAGAAGTATCGAAGTTTGCTTCAGTAGCATTGGTTGATATTGAT
TCGGAGGAAATACAGGTTTATGTCAAGTACTTTGACATAACTCTCATACCGTCCACTGTTTTCTTCTTCAATGCCCATCATATGAAGATGGATTCAGGGACTGCGGATCA
TACAAAGTGGGTCGGCGCTTTTCACCAAAAGCAGGATTTTATTGATGTTGTGGAGGTAACTGGTCTCTGA

mRNA sequence

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Protein sequence

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YCGTFIITCLFFTPAREFGGGAASASILDATSKLRWWWRFTARQRRMSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDID
SEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHQKQDFIDVVEVTGL

Cucsat.G2789 (gene) of Cucumber (B10) v3 genome