; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G2954 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G2954
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionTranscription initiation factor TFIID subunit 13
Genome locationctg1041:5679532..5682151
RNA-Seq ExpressionCucsat.G2954
SyntenyCucsat.G2954
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0006413 - translational initiation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0009960 - endosperm development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003195 - Transcription initiation factor IID, subunit 13
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK18217.1 transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa]1.06e-8399.26Show/hide
Query:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

XP_004136002.1 transcription initiation factor TFIID subunit 13 [Cucumis sativus]2.93e-85100Show/hide
Query:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

XP_008451497.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo]4.86e-8499.26Show/hide
Query:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

XP_022144527.1 transcription initiation factor TFIID subunit 13 [Momordica charantia]5.03e-8498.52Show/hide
Query:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

XP_038899215.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida]1.19e-8297.78Show/hide
Query:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRS
Subjt:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

TrEMBL top hitse value%identityAlignment
A0A0A0KB69 Uncharacterized protein1.42e-85100Show/hide
Query:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

A0A1S3BRL0 transcription initiation factor TFIID subunit 132.36e-8499.26Show/hide
Query:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

A0A5A7TZC2 Transcription initiation factor TFIID subunit 132.36e-8499.26Show/hide
Query:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

A0A5D3D2Q2 Transcription initiation factor TFIID subunit 135.11e-8499.26Show/hide
Query:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

A0A6J1CTQ0 transcription initiation factor TFIID subunit 132.44e-8498.52Show/hide
Query:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

SwissProt top hitse value%identityAlignment
P61216 Transcription initiation factor TFIID subunit 133.8e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q148M7 Transcription initiation factor TFIID subunit 133.8e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q15543 Transcription initiation factor TFIID subunit 133.8e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q5R9W6 Transcription initiation factor TFIID subunit 133.8e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q6NQH4 Transcription initiation factor TFIID subunit 134.4e-3666.39Show/hide
Query:  SSAGPSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTE
        ++A  SSK +  G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  E
Subjt:  SSAGPSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTE

Query:  LLSMNEELKQARRAFEIDEDKL
        LL+M EELKQAR+AF++DE +L
Subjt:  LLSMNEELKQARRAFEIDEDKL

Arabidopsis top hitse value%identityAlignment
AT1G02680.1 TBP-associated factor 133.1e-3766.39Show/hide
Query:  SSAGPSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTE
        ++A  SSK +  G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  E
Subjt:  SSAGPSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTE

Query:  LLSMNEELKQARRAFEIDEDKL
        LL+M EELKQAR+AF++DE +L
Subjt:  LLSMNEELKQARRAFEIDEDKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAATTCATCTGCTGGGCCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCA
CATGATGTATGGTTTTGGAGATGACCCTAATCCCCTTCCAGAGTCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATTACTGAACTGGTGTATAAAGCTCAGGAAA
TTGGATCAAAGAGAGGAAAGCTATCGGTGGAAGACTTTTTGTATTTAATGCGAAAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTG
AAACAAGCGAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACAATTCATCTGCTGGGCCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCA
CATGATGTATGGTTTTGGAGATGACCCTAATCCCCTTCCAGAGTCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATTACTGAACTGGTGTATAAAGCTCAGGAAA
TTGGATCAAAGAGAGGAAAGCTATCGGTGGAAGACTTTTTGTATTTAATGCGAAAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTG
AAACAAGCGAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAG
Protein sequenceShow/hide protein sequence
MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEEL
KQARRAFEIDEDKLKKAFEEEDKMD