; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G3171 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G3171
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionHistone H3.2
Genome locationctg1041:1472407..1482293
RNA-Seq ExpressionCucsat.G3171
SyntenyCucsat.G3171
Gene Ontology termsGO:0009567 - double fertilization forming a zygote and endosperm (biological process)
GO:0034508 - centromere complex assembly (biological process)
GO:0051301 - cell division (biological process)
GO:0051307 - meiotic chromosome separation (biological process)
GO:0000775 - chromosome, centromeric region (cellular component)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000164 - Histone H3/CENP-A
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011659152.1 histone H3-1 isoform X1 [Cucumis sativus]1.48e-123100Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTISLSKKKTPFGQPNLFTIVCVCRGNVHFVCLFTIVSCNIWCSYFCK
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTISLSKKKTPFGQPNLFTIVCVCRGNVHFVCLFTIVSCNIWCSYFCK
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTISLSKKKTPFGQPNLFTIVCVCRGNVHFVCLFTIVSCNIWCSYFCK

XP_011659153.1 histone H3-like centromeric protein HTR12 isoform X2 [Cucumis sativus]1.50e-85100Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

XP_022156549.1 histone H3-like centromeric protein HTR12 [Momordica charantia]6.52e-6680.88Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHP +R +NR P GSG A SSP  PSTPL GRTQNVRQAQ+  +RT  KK+RFRPGTVAL+EIR  QK+WNLLIPAS FIRAVKEVS QLAP+ITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKRVTI
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

XP_031744977.1 uncharacterized protein LOC101210011 isoform X3 [Cucumis sativus]1.82e-7369.61Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPPRRKSNRTPSGSGAAQSSPTAPST                                                       VKEVSNQLAPQITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTISLSKKKTPFGQPNLFTIVCVCRGNVHFVCLFTIVSCNIWCSYFCK
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTISLSKKKTPFGQPNLFTIVCVCRGNVHFVCLFTIVSCNIWCSYFCK
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTISLSKKKTPFGQPNLFTIVCVCRGNVHFVCLFTIVSCNIWCSYFCK

XP_038896752.1 histone H3-like centromeric protein HTR12 [Benincasa hispida]1.19e-7590.44Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPP+RKSNR PSG+GAAQSSP APSTPL+GRTQNV QAQ+S  RT KKKKRFRPGTVAL+EIR+LQKSWNLLIPASCFIRAVKEVS QLAPQITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

TrEMBL top hitse value%identityAlignment
A0A0A0K4F4 Histone H3.22.08e-12095.74Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIS-------LSKKKTPFGQPNLFTIVCVCRGNVHFVCLFTIVSCNIWCSYFCK
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI        LSKKKTPFGQPNLFTIVCVCRGNVHFVCLFTIVSCNIWCSYFCK
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIS-------LSKKKTPFGQPNLFTIVCVCRGNVHFVCLFTIVSCNIWCSYFCK

A0A1S3CG56 Histone H3.23.17e-4981.08Show/hide
Query:  APSTPLNGRTQNVRQAQNSSSRTIKKKK--RFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTM
        +PS P +       + Q SS  TIK K+  RFRPGTVAL+EIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTM
Subjt:  APSTPLNGRTQNVRQAQNSSSRTIKKKK--RFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTM

Query:  LCAIHAKRVTI
        LCAIHAKRVTI
Subjt:  LCAIHAKRVTI

A0A6J1DTT5 Histone H3.23.16e-6680.88Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHP +R +NR P GSG A SSP  PSTPL GRTQNVRQAQ+  +RT  KK+RFRPGTVAL+EIR  QK+WNLLIPAS FIRAVKEVS QLAP+ITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKRVTI
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

A0A6J1H6R9 Histone H3.24.25e-6480.15Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARA+HP +R SNR PS +GA+ SS  APSTPL+GRTQ+ RQ Q+  SRT  KK+RFRPGTVAL+EIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKRVTI
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

A0A6J1KTZ4 Histone H3.24.25e-6480.15Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARA+HP +R SNR PS +GA+ SS  APSTPL+GRTQ+ RQ Q+  SRT  KK+RFRPGTVAL+EIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKRVTI
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

SwissProt top hitse value%identityAlignment
P81195 Histone H3-1 (Fragment)1.9e-1856.25Show/hide
Query:  RQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        + AQ + S  +KK  RFRPGTVAL+EIR  QKS  LLI    F R V+E++ +    + R+Q++A++ALQEAAE ++V LFEDT LCAIHAKRVTI
Subjt:  RQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

P81199 Histone H3-5 (Fragment)2.5e-1860.47Show/hide
Query:  IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        +KK  RFRPGTVAL+EIR  QKS  LLI    F R V+E++ +    + R+Q++A++ALQEAAE +LV LFEDT LCAIHAKRVTI
Subjt:  IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

Q7RXR3 Histone H3-like centromeric protein hH3v1.8e-2148.12Show/hide
Query:  PPRRKS-NRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAP--QITRWQA
        PP++    ++ + S  A + PT  +TP   R       Q        KK+R+RPGT+ALKEIRN Q++ +LL+    F R V+E++ Q  P  +  RWQ+
Subjt:  PPRRKS-NRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAP--QITRWQA

Query:  EALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        +A++ALQEAAE FLVHLFEDT LCAIHAKRVTI
Subjt:  EALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

Q8RVQ9 Histone H3-like centromeric protein HTR123.2e-2658.68Show/hide
Query:  GSGAAQSSP-TAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED
        G    Q++P T+P+T      +  RQA    S+  KK  R+RPGTVALKEIR+ QK  NLLIPA+ FIR V+ +++ LA PQI RW AEALVALQEAAED
Subjt:  GSGAAQSSP-TAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED

Query:  FLVHLFEDTMLCAIHAKRVTI
        +LV LF D+MLCAIHA+RVT+
Subjt:  FLVHLFEDTMLCAIHAKRVTI

Q9Y812 Histone H3-like centromeric protein cnp11.7e-1959.55Show/hide
Query:  KKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQIT-----RWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        +KKR+RPGT AL+EIR  Q+S +LLI    F R V+E+S++     +     RWQ+ AL  LQEAAE FLVHLFEDT LCAIHAKRVTI
Subjt:  KKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQIT-----RWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

Arabidopsis top hitse value%identityAlignment
AT1G01370.1 Histone superfamily protein2.3e-2758.68Show/hide
Query:  GSGAAQSSP-TAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED
        G    Q++P T+P+T      +  RQA    S+  KK  R+RPGTVALKEIR+ QK  NLLIPA+ FIR V+ +++ LA PQI RW AEALVALQEAAED
Subjt:  GSGAAQSSP-TAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED

Query:  FLVHLFEDTMLCAIHAKRVTI
        +LV LF D+MLCAIHA+RVT+
Subjt:  FLVHLFEDTMLCAIHAKRVTI

AT1G01370.2 Histone superfamily protein2.3e-2758.68Show/hide
Query:  GSGAAQSSP-TAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED
        G    Q++P T+P+T      +  RQA    S+  KK  R+RPGTVALKEIR+ QK  NLLIPA+ FIR V+ +++ LA PQI RW AEALVALQEAAED
Subjt:  GSGAAQSSP-TAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED

Query:  FLVHLFEDTMLCAIHAKRVTI
        +LV LF D+MLCAIHA+RVT+
Subjt:  FLVHLFEDTMLCAIHAKRVTI

AT1G09200.1 Histone superfamily protein1.9e-1856.12Show/hide
Query:  RQAQNSSSRT--IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        + A+ S+  T  +KK  RFRPGTVAL+EIR  QKS  LLI    F R V+E++      + R+Q+ A+ ALQEAAE +LV LFEDT LCAIHAKRVTI
Subjt:  RQAQNSSSRT--IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

AT1G19890.1 male-gamete-specific histone H31.9e-1853Show/hide
Query:  TQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        T+  R+ +      +K+  RFRPGTVAL+EIR  QKS +LLI    F R V+E++      + R+Q+ A++ALQEAAE +LV LFEDT LCAIHAKRVTI
Subjt:  TQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

AT3G27360.1 Histone superfamily protein1.9e-1856.12Show/hide
Query:  RQAQNSSSRT--IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        + A+ S+  T  +KK  RFRPGTVAL+EIR  QKS  LLI    F R V+E++      + R+Q+ A+ ALQEAAE +LV LFEDT LCAIHAKRVTI
Subjt:  RQAQNSSSRT--IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCGAGCCAGGCATCCACCCCGAAGAAAGTCCAATCGCACGCCATCAGGTTCTGGAGCTGCACAGTCTTCCCCAACTGCCCCTTCGACGCCACTTAATGGGAGAAC
GCAAAATGTCAGGCAAGCTCAAAACTCATCGTCAAGAACAATAAAGAAAAAAAAACGCTTCAGACCAGGGACAGTGGCATTAAAAGAAATTCGGAATCTCCAGAAATCAT
GGAATCTGCTAATTCCAGCTAGCTGTTTCATTCGAGCAGTGAAAGAAGTAAGCAACCAGTTGGCTCCACAGATTACGCGTTGGCAAGCTGAAGCTTTAGTAGCTCTTCAG
GAAGCAGCAGAAGATTTTTTGGTTCACCTATTTGAAGATACCATGCTGTGTGCTATTCATGCCAAACGTGTAACTATCAGTCTGTCAAAAAAGAAGACACCATTTGGTCA
GCCCAATCTCTTTACTATTGTGTGCGTTTGTAGGGGTAACGTTCATTTTGTCTGTCTCTTTACTATTGTAAGTTGTAACATTTGGTGTTCGTATTTTTGTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCGAGCCAGGCATCCACCCCGAAGAAAGTCCAATCGCACGCCATCAGGTTCTGGAGCTGCACAGTCTTCCCCAACTGCCCCTTCGACGCCACTTAATGGGAGAAC
GCAAAATGTCAGGCAAGCTCAAAACTCATCGTCAAGAACAATAAAGAAAAAAAAACGCTTCAGACCAGGGACAGTGGCATTAAAAGAAATTCGGAATCTCCAGAAATCAT
GGAATCTGCTAATTCCAGCTAGCTGTTTCATTCGAGCAGTGAAAGAAGTAAGCAACCAGTTGGCTCCACAGATTACGCGTTGGCAAGCTGAAGCTTTAGTAGCTCTTCAG
GAAGCAGCAGAAGATTTTTTGGTTCACCTATTTGAAGATACCATGCTGTGTGCTATTCATGCCAAACGTGTAACTATCAGTCTGTCAAAAAAGAAGACACCATTTGGTCA
GCCCAATCTCTTTACTATTGTGTGCGTTTGTAGGGGTAACGTTCATTTTGTCTGTCTCTTTACTATTGTAAGTTGTAACATTTGGTGTTCGTATTTTTGTAAATGA
Protein sequenceShow/hide protein sequence
MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQ
EAAEDFLVHLFEDTMLCAIHAKRVTISLSKKKTPFGQPNLFTIVCVCRGNVHFVCLFTIVSCNIWCSYFCK