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Cucsat.G3206 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G3206
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRibonuclease T(2)
Genome locationctg1041:2575135..2577114
RNA-Seq ExpressionCucsat.G3206
SyntenyCucsat.G3206
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN45018.2 hypothetical protein Csa_016393 [Cucumis sativus]1.87e-138100Show/hide
Query:  ICNLGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAI
        ICNLGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAI
Subjt:  ICNLGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAI

Query:  FSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD
        FSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD
Subjt:  FSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD

XP_004149779.2 ribonuclease MC [Cucumis sativus]1.94e-138100Show/hide
Query:  ICNLGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAI
        ICNLGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAI
Subjt:  ICNLGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAI

Query:  FSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD
        FSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD
Subjt:  FSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD

XP_022143591.1 ribonuclease 1-like [Momordica charantia]3.25e-6067.16Show/hide
Query:  MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQK
        M +YW+DL +G++  AW +KW +HGTCSA  FD+FKYFC+GLDTYGRHAI SFL   GL PSS++   K SFI AIA+ T KKGGVICA DQ  R QL+ 
Subjt:  MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQK

Query:  AVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD
         VLCY KDG T+IDCPDNVSSSCPD F+WLALGD
Subjt:  AVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD

XP_022159333.1 ribonuclease MC-like [Momordica charantia]3.19e-3538.8Show/hide
Query:  CN---LGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRH
        CN   L   C   P N F IHGVWPS  S  ++GPC G +FDP  I+S++  +NQ W D+    +   W+ +W  HGTCS    +Q +YF  GL+ Y   
Subjt:  CN---LGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRH

Query:  A--IFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVW
           I   L ++ + P+  KY  KA    AI++   K+ G  C +DQ    QL +   CY KD  TL DCP N +++CP  F W
Subjt:  A--IFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVW

XP_038899255.1 ribonuclease MC-like [Benincasa hispida]7.84e-11382.61Show/hide
Query:  ICNLGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAI
        ICNLG SCKIQP+NEFGIHGVWPSVYSKGQIGPC GPSFDPLKI+SLQDRM+QYW+DLENGN IEAWASKW +HGTCSA  FD+FKYFCLGLDTYGRHA+
Subjt:  ICNLGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAI

Query:  FSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD
         SFL   GL PSSSKY+ K SF+ AIA+ T KKGGVICAVDQ  R QLQKAVLCY KDG TLIDCPDNVSSSCPDNF+WLALGD
Subjt:  FSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD

TrEMBL top hitse value%identityAlignment
A0A0A0K4L1 Uncharacterized protein7.32e-96100Show/hide
Query:  MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQK
        MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQK
Subjt:  MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQK

Query:  AVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD
        AVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD
Subjt:  AVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD

A0A6J1CQQ9 ribonuclease 1-like1.57e-6067.16Show/hide
Query:  MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQK
        M +YW+DL +G++  AW +KW +HGTCSA  FD+FKYFC+GLDTYGRHAI SFL   GL PSS++   K SFI AIA+ T KKGGVICA DQ  R QL+ 
Subjt:  MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQK

Query:  AVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD
         VLCY KDG T+IDCPDNVSSSCPD F+WLALGD
Subjt:  AVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD

A0A6J1DYI5 ribonuclease MC-like1.55e-3538.8Show/hide
Query:  CN---LGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRH
        CN   L   C   P N F IHGVWPS  S  ++GPC G +FDP  I+S++  +NQ W D+    +   W+ +W  HGTCS    +Q +YF  GL+ Y   
Subjt:  CN---LGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRH

Query:  A--IFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVW
           I   L ++ + P+  KY  KA    AI++   K+ G  C +DQ    QL +   CY KD  TL DCP N +++CP  F W
Subjt:  A--IFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVW

A0A6J1DZ67 Ribonuclease T(2)1.57e-3337.21Show/hide
Query:  CKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDRE
        C+ +PK  F IHG+WPS YS  +  PC G  FD  +I  ++ ++NQYW D+ NGN+   W  +W  HGTCS   F +  YF   LD   R+ + S L R 
Subjt:  CKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDRE

Query:  GLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVW
        G  P   K   +A+   AI+ +  K+  + C  ++    QL + VLC  K+G  L  C    +++CP+ FVW
Subjt:  GLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVW

A0A6J1E266 ribonuclease MC-like8.02e-3538.55Show/hide
Query:  NLGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCG-PSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIF
        NL   C   P++ F IHGVWP++ S G    C G P++D  KI ++++R+N  W  +  G +   W+ +W  HGTCS     Q  YF  GLDTY ++ I+
Subjt:  NLGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCG-PSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIF

Query:  SFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQY-RRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVW
        S LD+E + PS   Y +K+S   AI   T K  G+ C  + Y R  QL + +LC+ K    +IDCP NV + C +   W
Subjt:  SFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQY-RRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVW

SwissProt top hitse value%identityAlignment
Q01796 Ribonuclease S-29.6e-1022.86Show/hide
Query:  CKIQPKNEFGIHGVWPSVY-SKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSI-----EAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIF
        C   P N F IHG+WP     +GQ+  C    +      S+ D ++ +W  L+    I       W  +++ HGTC    ++Q +YF L +    +  + 
Subjt:  CKIQPKNEFGIHGVWPSVY-SKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSI-----EAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIF

Query:  SFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDN
        + L   G+ P +     K     AI   T +   + C  +    ++L +  +C+  +  +L  C  + S    +N
Subjt:  SFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDN

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATATGCAACCTTGGAAACAGCTGCAAAATACAACCGAAGAACGAGTTTGGTATTCATGGTGTATGGCCTAGTGTCTACTCCAAGGGCCAAATTGGACCTTGCTGCGGCCC
CTCTTTTGACCCCCTCAAAATCATCTCATTACAAGACCGGATGAACCAATACTGGAAAGATTTGGAGAACGGGAACTCGATAGAAGCATGGGCGAGTAAGTGGGAAATGC
ACGGAACTTGCTCCGCGGCTGGGTTTGATCAGTTCAAGTATTTCTGCTTGGGTCTGGATACCTACGGTCGCCATGCCATTTTTTCATTTCTAGACCGTGAAGGATTGGCT
CCCAGCTCTAGCAAGTATGTAGCCAAGGCTAGCTTTATCACAGCCATCGCAAACTCGACCTTGAAGAAGGGTGGCGTCATCTGCGCAGTTGATCAATATCGTCGAATACA
ACTTCAAAAGGCGGTTTTATGTTATGTCAAAGATGGTCATACTCTCATTGACTGCCCAGATAACGTTAGCAGTTCCTGTCCTGATAACTTCGTGTGGCTTGCCTTGGGTG
ATTGA
mRNA sequenceShow/hide mRNA sequence
ATATGCAACCTTGGAAACAGCTGCAAAATACAACCGAAGAACGAGTTTGGTATTCATGGTGTATGGCCTAGTGTCTACTCCAAGGGCCAAATTGGACCTTGCTGCGGCCC
CTCTTTTGACCCCCTCAAAATCATCTCATTACAAGACCGGATGAACCAATACTGGAAAGATTTGGAGAACGGGAACTCGATAGAAGCATGGGCGAGTAAGTGGGAAATGC
ACGGAACTTGCTCCGCGGCTGGGTTTGATCAGTTCAAGTATTTCTGCTTGGGTCTGGATACCTACGGTCGCCATGCCATTTTTTCATTTCTAGACCGTGAAGGATTGGCT
CCCAGCTCTAGCAAGTATGTAGCCAAGGCTAGCTTTATCACAGCCATCGCAAACTCGACCTTGAAGAAGGGTGGCGTCATCTGCGCAGTTGATCAATATCGTCGAATACA
ACTTCAAAAGGCGGTTTTATGTTATGTCAAAGATGGTCATACTCTCATTGACTGCCCAGATAACGTTAGCAGTTCCTGTCCTGATAACTTCGTGTGGCTTGCCTTGGGTG
ATTGA
Protein sequenceShow/hide protein sequence
ICNLGNSCKIQPKNEFGIHGVWPSVYSKGQIGPCCGPSFDPLKIISLQDRMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA
PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD