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Cucsat.G3261 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G3261
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionPSII 6.1 kDa protein
Genome locationctg1041:3922415..3924032
RNA-Seq ExpressionCucsat.G3261
SyntenyCucsat.G3261
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059706.1 photosystem II reaction center W protein [Cucumis melo var. makuwa]8.33e-7791.1Show/hide
Query:  MAAVTSAAAATVRTSLVQNR-LLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST
        MAAVTSAAAA VRTSLVQNR  LPSASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLST
Subjt:  MAAVTSAAAATVRTSLVQNR-LLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST

Query:  EGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        EGTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  EGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]5.28e-8294.48Show/hide
Query:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE
        MAAVTSAAAATVRTSLVQNRLLPSASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE
Subjt:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE

Query:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
Subjt:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]5.03e-7891.78Show/hide
Query:  MAAVTSAAAATVRTSLVQNR-LLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST
        MAAVTSAAAA VRTSLVQNR  LPSASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST
Subjt:  MAAVTSAAAATVRTSLVQNR-LLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST

Query:  EGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        EGTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  EGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

XP_031745255.1 photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus]8.48e-92100Show/hide
Query:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE
        MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE
Subjt:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE

Query:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
Subjt:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]4.86e-7890.34Show/hide
Query:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE
        MAAVTSAA AT RTSLVQNR LP+ASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE
Subjt:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE

Query:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        GTGLPFGLSNNLLGWIL GVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein2.56e-8294.48Show/hide
Query:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE
        MAAVTSAAAATVRTSLVQNRLLPSASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE
Subjt:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE

Query:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
Subjt:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein2.43e-7891.78Show/hide
Query:  MAAVTSAAAATVRTSLVQNR-LLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST
        MAAVTSAAAA VRTSLVQNR  LPSASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST
Subjt:  MAAVTSAAAATVRTSLVQNR-LLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST

Query:  EGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        EGTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  EGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein4.03e-7791.1Show/hide
Query:  MAAVTSAAAATVRTSLVQNR-LLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST
        MAAVTSAAAA VRTSLVQNR  LPSASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLST
Subjt:  MAAVTSAAAATVRTSLVQNR-LLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST

Query:  EGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        EGTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  EGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein1.25e-7385.52Show/hide
Query:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE
        MAAVTSAAAATVR+SLVQNR LP+ASP+PFLL        GLPALGKKGGVRCSMEGK NG+VENKSS LGMGASL+AAA AA+MSSPAMALVDERLSTE
Subjt:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE

Query:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        GTGLPFGLSNNLLGWILLGVF  IWAFYI+YTSTLEEDEESGLSL
Subjt:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

A0A6J1JTT6 PSII 6.1 kDa protein1.70e-7184.83Show/hide
Query:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE
        MAAVTSAAAATVR+SLVQNR  P+ASPAPFLL        GLPAL KKG VRCSMEGK NGEVENKSS LGMGASL+AAA AA+MSSPAMALVDERLSTE
Subjt:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE

Query:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        GTGLPFGLSNNLLGWILLGVF  IWAFYI+YTSTLEEDEESGLSL
Subjt:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic3.0e-3060.14Show/hide
Query:  MAAVTSAAAATVRTSLVQNRLLPS-ASPAPFLLVCMDIFDIGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERL
        MA+ T A+A+TV  +     L P+ A  AP L         GLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER+
Subjt:  MAAVTSAAAATVRTSLVQNRLLPS-ASPAPFLLVCMDIFDIGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERL

Query:  STEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        STEGTGLPFGLSNNLLGWIL GVF LIW F+ VYTS+LEEDEESGLSL
Subjt:  STEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic9.8e-3458.11Show/hide
Query:  MAAVTSAAAATV--RTSLVQN-RLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERL
        MA +T++++A++  R SLV N R+  S+SP            +GLP++ K+  V CS+E K +      ++N  MGASL+AAA AAT+S+PAMALVDER+
Subjt:  MAAVTSAAAATV--RTSLVQN-RLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERL

Query:  STEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        STEGTGLPFGLSNNLLGWIL GVF LIWA Y VY S LEEDEESGLSL
Subjt:  STEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic1.6e-2050Show/hide
Query:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGG--VRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLS
        MA V++AAA    TS+V   +L  A P            +GLP +  +    VRC+   +        ++  G GASL+A A  A   +PAMALVDER+S
Subjt:  MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGG--VRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLS

Query:  TEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESG
        TEGTGL  GLSNNLLGWILLGVF LIW+ Y +YTS LEEDEESG
Subjt:  TEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic2.9e-0940Show/hide
Query:  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLE--EDEESGLSL
        S +    ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVF  +WA + +    L   ED + GL L
Subjt:  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W2.1e-3160.14Show/hide
Query:  MAAVTSAAAATVRTSLVQNRLLPS-ASPAPFLLVCMDIFDIGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERL
        MA+ T A+A+TV  +     L P+ A  AP L         GLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER+
Subjt:  MAAVTSAAAATVRTSLVQNRLLPS-ASPAPFLLVCMDIFDIGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERL

Query:  STEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        STEGTGLPFGLSNNLLGWIL GVF LIW F+ VYTS+LEEDEESGLSL
Subjt:  STEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCTCCGCCGCCGCTGCCACTGTCCGCACTTCTCTGGTGCAGAACCGCCTTCTGCCATCAGCTTCACCCGCCCCTTTTCTTCTTGTTTGTATGGACAT
CTTTGATATAGGGTTGCCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAGAACAAATCAAGCAACTTGGGAATGGGGG
CATCGTTGATAGCTGCGGCGTGTGCTGCAACGATGTCAAGCCCGGCGATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGGCTTCCATTTGGTTTGAGCAAC
AATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGCTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTCGAAGAGGATGAAGAATCTGGCTTATCACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGTCACCTCCGCCGCCGCTGCCACTGTCCGCACTTCTCTGGTGCAGAACCGCCTTCTGCCATCAGCTTCACCCGCCCCTTTTCTTCTTGTTTGTATGGACAT
CTTTGATATAGGGTTGCCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAGAACAAATCAAGCAACTTGGGAATGGGGG
CATCGTTGATAGCTGCGGCGTGTGCTGCAACGATGTCAAGCCCGGCGATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGGCTTCCATTTGGTTTGAGCAAC
AATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGCTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTCGAAGAGGATGAAGAATCTGGCTTATCACTTTAA
Protein sequenceShow/hide protein sequence
MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSN
NLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL