CuGenDBv2

Gene ID	Cucsat.G3331
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Nucleolar protein 16
Genome location	ctg1041:5308869..5309482
RNA-Seq Expression	Cucsat.G3331
Synteny	Cucsat.G3331
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136032.1 uncharacterized protein LOC101209910 [Cucumis sativus]

1.46e-133

100

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR

XP_008451586.1 PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo]

2.17e-130

98.42

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPD+VL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRK
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTRK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRK

XP_022991747.1 uncharacterized protein LOC111488281 [Cucurbita maxima]

7.99e-120

90.16

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPS    DDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP

Query:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR
        D+VLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTR
Subjt:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR

XP_023547523.1 uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]

4.62e-119

89.64

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPS    DDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP

Query:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR
        D+VLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY+ CLD NPLILTR
Subjt:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR

XP_038898931.1 nucleolar protein 16 [Benincasa hispida]

2.56e-121

90.26

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP
        MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWD+K  VI NYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS    D+P
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP

Query:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKR
        D+VLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLIL RK+
Subjt:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAV9 Nucleolar protein 16

7.08e-134

100

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR

A0A1S3BSM4 Nucleolar protein 16

1.05e-130

98.42

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPD+VL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRK
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTRK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRK

A0A5A7VLA5 Nucleolar protein 16

1.05e-130

98.42

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPD+VL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRK
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTRK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRK

A0A6J1GRW5 Nucleolar protein 16

9.11e-119

89.12

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESD LQVPPS    DDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP

Query:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR
        D+VLDSSGSDVEEDDLKTALGKKR+DGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTR
Subjt:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR

A0A6J1JMQ4 Nucleolar protein 16

3.87e-120

90.16

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPS    DDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP

Query:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR
        D+VLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTR
Subjt:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

1.9e-64

61.93

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDT--
        M RSRRKY+ SR KV+V LPK+NPN+FKP+F  PPKLR+L+    ++ P WD++ SVIQNYKSFGVISNPNLL +R+RTDH+++ DSL VPP  +P T  
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDT--

Query:  -------VLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILT
                +D SGS++EEDDLKTALGK+RKDGKSAPLQPLTT+QR H+ +L+EK+GDD + M+ D KLNSMQHSVATL KLC RY    D NP++++
Subjt:  -------VLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILT

Sequences

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CDS sequence

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ATGGGAAGGTCTCGAAGAAAGTACAAGAAATCTCGCCCAAAAGTTAAGGTTGGTTTGCCCAAAAGGAACCCTAATGTCTTCAAGCCATCTTTTTGCATGCCGCCTAAGCT
TCGCTCCTTGCTCGCCGAACAATTTGAAGAAGATCCAACATGGGATGAGAAAGGAAGTGTCATTCAAAATTATAAGTCCTTTGGTGTTATTTCTAATCCTAATTTGCTCA
GTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTCCAAGTCCCGCCATCCGATGACCCTGACACCGTTCTTGATTCTTCCGGTAGTGATGTTGAAGAGGAC
GATTTGAAAACAGCATTGGGAAAGAAGCGCAAAGATGGGAAATCTGCACCTCTGCAACCGTTGACCACACTTCAGCGTGTTCATGTCGGTAAGCTAATCGAGAAATATGG
AGATGATTACCAGAGGATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCAACTCTGGAGAAACTATGCAAAAGATATAACAGTTGTTTAGATTCGAATC
CATTGATATTGACTCGTAAACGACGATAG

mRNA sequence

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Protein sequence

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MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVLDSSGSDVEED
DLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR

Cucsat.G3331 (gene) of Cucumber (B10) v3 genome