CuGenDBv2

Gene ID	Cucsat.G3338
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like
Genome location	ctg1041:5436255..5438483
RNA-Seq Expression	Cucsat.G3338
Synteny	Cucsat.G3338
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]

1.33e-205

76.3

Show/hide

Query:  KSFHELRHWIKFFRGASSKFSPFSRTLG------------------------------------------------------------------TVSFDS
        KSFHE  HWIKFFRGASSKF PFSRT G                                                                   VSF+S
Subjt:  KSFHELRHWIKFFRGASSKFSPFSRTLG------------------------------------------------------------------TVSFDS

Query:  HFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRA
        HFRVPWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA+IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRA
Subjt:  HFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRA

Query:  STMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDE
        STMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDE
Subjt:  STMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDE

Query:  ELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS
        E +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAVKKNDFGPLG+LKRRMQNNS
Subjt:  ELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

TYK18147.1 uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa]

5.04e-206

79.29

Show/hide

Query:  KSFHELRHWIKFFRGASSKFSPFSRTLGTV-------------------------------------------------SFDSHFRVPWRLVRNIQPSLG
        KSFHE  HWIKFFRGASSKF PFSRT GTV                                                 SF+S  R PWR +RNIQPSLG
Subjt:  KSFHELRHWIKFFRGASSKFSPFSRTLGTV-------------------------------------------------SFDSHFRVPWRLVRNIQPSLG

Query:  DPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFG
        DPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA+IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFG
Subjt:  DPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFG

Query:  TPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKE
        TPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KE
Subjt:  TPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKE

Query:  IDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS
        IDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAVKKNDFGPLG+LKRRMQNNS
Subjt:  IDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

XP_004136166.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Cucumis sativus]

1.47e-213

98.98

Show/hide

Query:  RTLGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEK
        ++ GTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEK
Subjt:  RTLGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEK

Query:  LSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKT
        LSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKT
Subjt:  LSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKT

Query:  DNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS
        DNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS
Subjt:  DNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

XP_008451550.1 PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]

9.38e-206

76.3

Show/hide

Query:  KSFHELRHWIKFFRGASSKFSPFSRTLG------------------------------------------------------------------TVSFDS
        KSFHE  HWIKFFRGASSKF PFSRT G                                                                   VSF+S
Subjt:  KSFHELRHWIKFFRGASSKFSPFSRTLG------------------------------------------------------------------TVSFDS

Query:  HFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRA
        HFRVPWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA+IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRA
Subjt:  HFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRA

Query:  STMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDE
        STMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDE
Subjt:  STMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDE

Query:  ELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS
        E +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAVKKNDFGPLG+LKRRMQNNS
Subjt:  ELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

XP_008451552.1 PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]

2.25e-209

80.11

Show/hide

Query:  KSFHELRHWIKFFRGASSKFSPFSRTLGTV-------------------------------------------------SFDSHFRVPWRLVRNIQPSLG
        KSFHE  HWIKFFRGASSKF PFSRT GTV                                                 SF+SHFRVPWR +RNIQPSLG
Subjt:  KSFHELRHWIKFFRGASSKFSPFSRTLGTV-------------------------------------------------SFDSHFRVPWRLVRNIQPSLG

Query:  DPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFG
        DPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA+IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFG
Subjt:  DPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFG

Query:  TPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKE
        TPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KE
Subjt:  TPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKE

Query:  IDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS
        IDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAVKKNDFGPLG+LKRRMQNNS
Subjt:  IDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAY7 Uncharacterized protein

7.10e-214

98.98

Show/hide

Query:  RTLGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEK
        ++ GTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEK
Subjt:  RTLGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEK

Query:  LSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKT
        LSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKT
Subjt:  LSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKT

Query:  DNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS
        DNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS
Subjt:  DNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

1.09e-209

80.11

Show/hide

Query:  KSFHELRHWIKFFRGASSKFSPFSRTLGTV-------------------------------------------------SFDSHFRVPWRLVRNIQPSLG
        KSFHE  HWIKFFRGASSKF PFSRT GTV                                                 SF+SHFRVPWR +RNIQPSLG
Subjt:  KSFHELRHWIKFFRGASSKFSPFSRTLGTV-------------------------------------------------SFDSHFRVPWRLVRNIQPSLG

Query:  DPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFG
        DPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA+IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFG
Subjt:  DPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFG

Query:  TPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKE
        TPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KE
Subjt:  TPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKE

Query:  IDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS
        IDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAVKKNDFGPLG+LKRRMQNNS
Subjt:  IDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

4.54e-206

76.3

Show/hide

Query:  KSFHELRHWIKFFRGASSKFSPFSRTLG------------------------------------------------------------------TVSFDS
        KSFHE  HWIKFFRGASSKF PFSRT G                                                                   VSF+S
Subjt:  KSFHELRHWIKFFRGASSKFSPFSRTLG------------------------------------------------------------------TVSFDS

Query:  HFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRA
        HFRVPWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA+IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRA
Subjt:  HFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRA

Query:  STMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDE
        STMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDE
Subjt:  STMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDE

Query:  ELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS
        E +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAVKKNDFGPLG+LKRRMQNNS
Subjt:  ELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

A0A5A7VN29 Uncharacterized protein

6.45e-206

76.3

Show/hide

Query:  KSFHELRHWIKFFRGASSKFSPFSRTLG------------------------------------------------------------------TVSFDS
        KSFHE  HWIKFFRGASSKF PFSRT G                                                                   VSF+S
Subjt:  KSFHELRHWIKFFRGASSKFSPFSRTLG------------------------------------------------------------------TVSFDS

Query:  HFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRA
        HFRVPWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA+IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRA
Subjt:  HFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRA

Query:  STMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDE
        STMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDE
Subjt:  STMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDE

Query:  ELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS
        E +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAVKKNDFGPLG+LKRRMQNNS
Subjt:  ELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

A0A5D3D2J4 Uncharacterized protein

2.44e-206

79.29

Show/hide

Query:  KSFHELRHWIKFFRGASSKFSPFSRTLGTV-------------------------------------------------SFDSHFRVPWRLVRNIQPSLG
        KSFHE  HWIKFFRGASSKF PFSRT GTV                                                 SF+S  R PWR +RNIQPSLG
Subjt:  KSFHELRHWIKFFRGASSKFSPFSRTLGTV-------------------------------------------------SFDSHFRVPWRLVRNIQPSLG

Query:  DPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFG
        DPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA+IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFG
Subjt:  DPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFG

Query:  TPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKE
        TPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KE
Subjt:  TPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKE

Query:  IDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS
        IDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAVKKNDFGPLG+LKRRMQNNS
Subjt:  IDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

3.3e-53

50.22

Show/hide

Query:  TDWEDQEGDIEE-MDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLR-VTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVI
        T  E +   I++ + SPWEGA++Y+R+++V H+EY +TLERLGL  LS+  S++RA+ +GL   T D       TPV +SVDVTR+  +LRLDGIV+TVI
Subjt:  TDWEDQEGDIEE-MDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLR-VTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVI

Query:  TLNCYSCCEPAPECIFSNFSIILSEEPI-EEPDVINMGIISGKDMFKTDNGNSD----EDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVIC
        TL C+ C EPAP+ IF+NFS++L+E+P+ EEPD   +G I  +D    D G +      D ++ ID DD+L+FP  +KEIDISK+IRD++HLEIT++ +C
Subjt:  TLNCYSCCEPAPECIFSNFSIILSEEPI-EEPDVINMGIISGKDMFKTDNGNSD----EDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVIC

Query:  DPGCKGICLNCGINLN-TGSCKCSKQAVK
        +P CKG+CL CG NLN T SC C  + V+
Subjt:  DPGCKGICLNCGINLN-TGSCKCSKQAVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

2.4e-83

59.77

Show/hide

Query:  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV
        IK+   A   +  + +S  E ++I  DWEDQE +IE+  SPWEG+++Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTKDVKDYP GTPV
Subjt:  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV

Query:  QISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDI
        Q+SVDV RK KKLRLDGIV+TVITL C  C E   E IFSNFS++L+EEP+EEPDVI++G   G D  K +  + D++D+  ID +D+L+FPP  KEIDI
Subjt:  QISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDI

Query:  SKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQ
        SK+IRD++HLEIT+  ICD  CKG+CL CG NLN   C C ++  K   +GPLG+L+ +MQ
Subjt:  SKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

1.7e-84

59.77

Show/hide

Query:  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV
        IK+   A   +  + +S  E ++I  DWEDQE +IE+  SPWEG+++Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTKDVKDYP GTPV
Subjt:  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV

Query:  QISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDI
        Q+SVDV RK KKLRLDGIV+TVITL C  C E   E IFSNFS++L+EEP+EEPDVI++G   G D  K +  + D++D+  ID +D+L+FPP  KEIDI
Subjt:  QISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDI

Query:  SKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQ
        SK+IRD++HLEIT+  ICD  CKG+CL CG NLN   C C ++  K   +GPLG+L+ +MQ
Subjt:  SKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQ

Sequences

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CDS sequence

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TTTCGTTCGTGGCTCCTCAACCAACTTAACTCGACTACAAAGTCCTTCCATGAGTTAAGGCACTGGATAAAATTTTTCCGGGGAGCGTCATCGAAATTCTCACCATTTTC
AAGAACCTTAGGGACTGTTTCTTTTGATTCACATTTTCGAGTTCCATGGAGACTTGTGAGAAATATTCAGCCAAGCTTGGGTGACCCTTGTATTAAGATGAAATCTACTG
CCATAAAGTGTGTGAAACCTACCTATCAATCCCTTTTTGAGGACAATTCGATTATTACTGACTGGGAAGATCAAGAAGGGGATATTGAGGAGATGGACTCACCTTGGGAA
GGAGCAATTATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGGTTAGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGC
ATCAACGATGGGTCTACGCGTAACTAAAGATGTGAAAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTCACAAGGAAAAATAAAAAGTTGAGGTTGGATG
GAATAGTTAAAACTGTCATCACTCTGAATTGTTATAGCTGTTGTGAGCCTGCTCCTGAATGCATTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAA
CCTGATGTCATAAATATGGGAATCATTAGCGGAAAGGATATGTTCAAGACTGACAATGGAAATAGTGATGAAGATGATGAAGAGTTGATAGACTTGGATGATCAACTCTA
TTTTCCTCCTCTGAACAAAGAGATAGATATATCAAAGAACATTAGAGACATCTTGCATCTAGAAATTACCATGAATGTGATATGTGATCCGGGATGCAAAGGTATTTGTC
TAAATTGTGGTATAAATTTGAATACTGGAAGCTGTAAATGTAGTAAACAGGCTGTAAAGAAGAATGATTTTGGTCCTCTTGGAGATTTGAAAAGACGAATGCAGAACAAT
TCTTAA

mRNA sequence

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Protein sequence

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FRSWLLNQLNSTTKSFHELRHWIKFFRGASSKFSPFSRTLGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWE
GAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEE
PDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNN
S

Cucsat.G3338 (gene) of Cucumber (B10) v3 genome