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Cucsat.G3436 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G3436
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionPentatricopeptide repeat-containing protein
Genome locationctg1041:7172112..7174701
RNA-Seq ExpressionCucsat.G3436
SyntenyCucsat.G3436
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593380.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]2.58e-3078.87Show/hide
Query:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP
        RD +TW AVLVG A NGLGKE I IFKQ+EA GI PNEITFIGVL ACSHAGL+DEG +YF+SMNHHGITP
Subjt:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP

KAG7025727.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.60e-3078.87Show/hide
Query:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP
        RD +TW AVLVG A NGLGKE I IFKQ+EA GI PNEITFIGVL ACSHAGL+DEG +YF+SMNHHGITP
Subjt:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP

XP_022148556.1 pentatricopeptide repeat-containing protein At4g02750-like [Momordica charantia]4.81e-3075Show/hide
Query:  SRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP
        SRD +TW AVLVGCA NGLGK+ I IFKQ+EAAG+ PNEITFIGVL ACSH GL+DEG +YF+ MN HGITP
Subjt:  SRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP

XP_022960219.1 pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata]2.58e-3078.87Show/hide
Query:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP
        RD +TW AVLVG A NGLGKE I IFKQ+EA GI PNEITFIGVL ACSHAGL+DEG +YF+SMNHHGITP
Subjt:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP

XP_023515085.1 pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp. pepo]2.58e-3078.87Show/hide
Query:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP
        RD +TW AVLVG A NGLGKE I IFKQ+EA GI PNEITFIGVL ACSHAGL+DEG +YF+SMNHHGITP
Subjt:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP

TrEMBL top hitse value%identityAlignment
A0A251PXS7 DYW_deaminase domain-containing protein (Fragment)7.14e-2765.38Show/hide
Query:  FLCSISRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMN-HHGITP
        FL    RDI+TW AVL GCA NGLGKE + +FKQ+E  GI PNE +F+ +L ACSHAGL+DEG  YFNSM+ HHGITP
Subjt:  FLCSISRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMN-HHGITP

A0A5N5G813 Pentatricopeptide repeat-containing protein4.56e-2870.83Show/hide
Query:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMN-HHGITP
        RDI+TW AVL GCA NGLGKE + +FKQ+E  GI PNEITF+ +L ACSHAGL+DEGR YFNSM+ H+GITP
Subjt:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMN-HHGITP

A0A6J1D5R5 pentatricopeptide repeat-containing protein At4g02750-like2.33e-3075Show/hide
Query:  SRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP
        SRD +TW AVLVGCA NGLGK+ I IFKQ+EAAG+ PNEITFIGVL ACSH GL+DEG +YF+ MN HGITP
Subjt:  SRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP

A0A6J1HAB1 pentatricopeptide repeat-containing protein At4g02750-like1.25e-3078.87Show/hide
Query:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP
        RD +TW AVLVG A NGLGKE I IFKQ+EA GI PNEITFIGVL ACSHAGL+DEG +YF+SMNHHGITP
Subjt:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP

A0A6J1KVF3 pentatricopeptide repeat-containing protein At4g02750-like2.79e-2976.06Show/hide
Query:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP
        RD +TW A LVG A NGLGKE I IFKQ+EA GI PNEITFIGVL ACSHAGL+DEG +YF+ MNHHGITP
Subjt:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNHHGITP

SwissProt top hitse value%identityAlignment
Q9FK93 Pentatricopeptide repeat-containing protein At5g396807.4e-1647.37Show/hide
Query:  ESLKKAFLCSISRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSM
        E  +KAF     RDI+TW  ++ GC+H+GLG+E +  F ++   G  PN ITFIGVL ACSH G +++G  YFN +
Subjt:  ESLKKAFLCSISRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSM

Q9LFI1 Pentatricopeptide repeat-containing protein At3g53360, mitochondrial4.3e-1646.58Show/hide
Query:  SRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSM-NHHGITP
        +RD+++W  ++VG A +G G+E + +FK++++AGI PN +TF+GVL ACSH GL++EG + + +M   HGI+P
Subjt:  SRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSM-NHHGITP

Q9MA95 Putative pentatricopeptide repeat-containing protein At3g052401.6e-1545.98Show/hide
Query:  DRESLKKAFLCSISRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAG-IFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH-HGITP
        D ES KKAF     +D I W  V++G A +G G E + IF++++  G   P+ IT++GVL+ACSH GL++EG+RYF  M   HG+ P
Subjt:  DRESLKKAFLCSISRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAG-IFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH-HGITP

Q9SI53 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial1.1e-1448.61Show/hide
Query:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH-HGITP
        RD+ITW  ++ G A NG  +E + +F++++++G  PN IT +GVLFACSHAGL+++G  YF SM   +GI P
Subjt:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH-HGITP

Q9SN39 Pentatricopeptide repeat-containing protein DOT4, chloroplastic8.2e-1547.76Show/hide
Query:  SRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH
        S+D+++W  ++ G   +G GKE I +F Q+  AGI  +EI+F+ +L+ACSH+GL+DEG R+FN M H
Subjt:  SRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH

Arabidopsis top hitse value%identityAlignment
AT2G03880.1 Pentatricopeptide repeat (PPR) superfamily protein7.6e-1648.61Show/hide
Query:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH-HGITP
        RD+ITW  ++ G A NG  +E + +F++++++G  PN IT +GVLFACSHAGL+++G  YF SM   +GI P
Subjt:  RDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH-HGITP

AT3G05240.1 mitochondrial editing factor 191.2e-1645.98Show/hide
Query:  DRESLKKAFLCSISRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAG-IFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH-HGITP
        D ES KKAF     +D I W  V++G A +G G E + IF++++  G   P+ IT++GVL+ACSH GL++EG+RYF  M   HG+ P
Subjt:  DRESLKKAFLCSISRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAG-IFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH-HGITP

AT3G53360.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.1e-1746.58Show/hide
Query:  SRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSM-NHHGITP
        +RD+++W  ++VG A +G G+E + +FK++++AGI PN +TF+GVL ACSH GL++EG + + +M   HGI+P
Subjt:  SRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSM-NHHGITP

AT4G18750.1 Pentatricopeptide repeat (PPR) superfamily protein5.8e-1647.76Show/hide
Query:  SRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH
        S+D+++W  ++ G   +G GKE I +F Q+  AGI  +EI+F+ +L+ACSH+GL+DEG R+FN M H
Subjt:  SRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH

AT5G39680.1 Pentatricopeptide repeat (PPR) superfamily protein5.2e-1747.37Show/hide
Query:  ESLKKAFLCSISRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSM
        E  +KAF     RDI+TW  ++ GC+H+GLG+E +  F ++   G  PN ITFIGVL ACSH G +++G  YFN +
Subjt:  ESLKKAFLCSISRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTTCAAAGACGGGGAAGTTTCGAGCCTAAACCTTCTCGATTCTGCAGTGTCGTCTCTGCTTCGGATCCTCGTTTGGCTGTTTCTTGATCGTGAATCGCTCAAGAA
GGCATTTCTGTGTTCGATCAGTCGAGACATAATTACCTGGAAAGCAGTTTTAGTTGGCTGTGCACATAATGGACTAGGTAAAGAGGTAATTGGGATTTTCAAACAAATTG
AAGCTGCAGGAATTTTTCCCAATGAAATCACGTTTATTGGTGTTCTGTTTGCATGTAGTCATGCTGGATTAATAGATGAGGGCCGGAGGTATTTTAATTCAATGAATCAT
CATGGAATTACCCCCTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCTTCAAAGACGGGGAAGTTTCGAGCCTAAACCTTCTCGATTCTGCAGTGTCGTCTCTGCTTCGGATCCTCGTTTGGCTGTTTCTTGATCGTGAATCGCTCAAGAA
GGCATTTCTGTGTTCGATCAGTCGAGACATAATTACCTGGAAAGCAGTTTTAGTTGGCTGTGCACATAATGGACTAGGTAAAGAGGTAATTGGGATTTTCAAACAAATTG
AAGCTGCAGGAATTTTTCCCAATGAAATCACGTTTATTGGTGTTCTGTTTGCATGTAGTCATGCTGGATTAATAGATGAGGGCCGGAGGTATTTTAATTCAATGAATCAT
CATGGAATTACCCCCTGTTAA
Protein sequenceShow/hide protein sequence
MIFKDGEVSSLNLLDSAVSSLLRILVWLFLDRESLKKAFLCSISRDIITWKAVLVGCAHNGLGKEVIGIFKQIEAAGIFPNEITFIGVLFACSHAGLIDEGRRYFNSMNH
HGITPC