CuGenDBv2

Gene ID	Cucsat.G3685
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	DNA-directed RNA polymerase I subunit rpa49
Genome location	ctg1047:1092886..1096151
RNA-Seq Expression	Cucsat.G3685
Synteny	Cucsat.G3685
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0059416.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa]

6.21e-289

94.5

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Query:  MADDTKSVELEENHYA----SSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS
        MA+DTKS+ELEENH A    +SQSPAKKKKKSEKKKKRVLSM+AKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQS SVRARVYKH+N+PNRMQLVVS
Subjt:  MADDTKSVELEENHYA----SSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDV+ENESPSVANEELS Q+KANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI
        LHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+ATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_004141689.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis sativus]

7.27e-306

100

Show/hide

Query:  MESMADDTKSVELEENHYASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP
        MESMADDTKSVELEENHYASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP
Subjt:  MESMADDTKSVELEENHYASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP

Query:  TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKL
        TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKL
Subjt:  TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKL

Query:  HALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQ
        HALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQ
Subjt:  HALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQ

Query:  DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL
        DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL
Subjt:  DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL

Query:  HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
Subjt:  HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_008462335.1 PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo]

2.53e-288

94.27

Show/hide

Query:  MADDTKSVELEENHYA----SSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS
        MA+DTKS+E EENH A    +SQSPAKKKKKSEKKKKRVLSM+AKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQS SVRARVYKH+N+PNRMQLVVS
Subjt:  MADDTKSVELEENHYA----SSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDV+ENESPSVANEELS Q+KANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI
        LHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+ATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_022992259.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

3.72e-254

83.37

Show/hide

Query:  MADDTKSVELEENHY----ASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKE---QSRSVRARVYKHKNRPNRMQL
        MA+DTKS ELE+NHY    A+SQSPAKKKKKSEKKKKRV S++AKIQVLSN PQKTPP+V YFPSGFDPHKDA++E   +  SVRARVY+HKN+PNRMQL
Subjt:  MADDTKSVELEENHY----ASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKE---QSRSVRARVYKHKNRPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDV+E ES SV NEELS Q+KA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQ

Query:  AQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKL
        A+KLH+LKQEDDP+TK DLDG+MKNVVVNKEALE T A++ARNIP YN SATTP+EAYPLDKIILKGEWSFLED+Y  LQE AEISA YPSFVRNRIYKL
Subjt:  AQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+RRLS + INLLISHVLVL+LFADEFSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_038896156.1 DNA-directed RNA polymerase I subunit rpa49 [Benincasa hispida]

2.64e-276

90.6

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Query:  MADDTKSVELEENHYA----SSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS
        MA+DTKS+ELEENHYA    +S+SPAKKKKKSEKKKKRV S++AKIQVL N PQKTPP+VGYFPSGFDPHKDAD+EQ+ SVRARVYKHKN+PNRMQLVVS
Subjt:  MADDTKSVELEENHYA----SSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDV+ENESPSVANEELS Q+KA+RMRELT LYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI
        LHALKQEDDP+TK DLD RMKNVVVN EALEGTQAE+ARNIP YNASATTPQEAYPLDKIILKGEW+FLEDLYFRLQETAEISA YP FVR+RIYKLQDI
Subjt:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPT+ESRR+S +KINLLISHVLVL+LF DEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSL TLPIPLQFP+LRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCN4 Uncharacterized protein

3.52e-306

100

Show/hide

Query:  MESMADDTKSVELEENHYASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP
        MESMADDTKSVELEENHYASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP
Subjt:  MESMADDTKSVELEENHYASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP

Query:  TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKL
        TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKL
Subjt:  TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKL

Query:  HALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQ
        HALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQ
Subjt:  HALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQ

Query:  DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL
        DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL
Subjt:  DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL

Query:  HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
Subjt:  HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A1S3CH93 DNA-directed RNA polymerase I subunit rpa49

1.22e-288

94.27

Show/hide

Query:  MADDTKSVELEENHYA----SSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS
        MA+DTKS+E EENH A    +SQSPAKKKKKSEKKKKRVLSM+AKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQS SVRARVYKH+N+PNRMQLVVS
Subjt:  MADDTKSVELEENHYA----SSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDV+ENESPSVANEELS Q+KANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI
        LHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+ATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A5D3BXN3 DNA-directed RNA polymerase I subunit rpa49

3.01e-289

94.5

Show/hide

Query:  MADDTKSVELEENHYA----SSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS
        MA+DTKS+ELEENH A    +SQSPAKKKKKSEKKKKRVLSM+AKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQS SVRARVYKH+N+PNRMQLVVS
Subjt:  MADDTKSVELEENHYA----SSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDV+ENESPSVANEELS Q+KANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI
        LHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+ATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

2.44e-252

82.69

Show/hide

Query:  MADDTKSVELEENHYASS----QSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKE---QSRSVRARVYKHKNRPNRMQL
        MA+DTKS ELE+NHY+      QSPAKKKKKSEKKKKRV S++AKIQVLSN PQKTPP+V YFPSGFDPHKD ++E   +  SVRARVY+HKN+PNRMQL
Subjt:  MADDTKSVELEENHYASS----QSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKE---QSRSVRARVYKHKNRPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDV+E ESPSV NEELS Q+KA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQ

Query:  AQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKL
        A+KL +LKQEDDP+TK DLDG+MKNVVVNKEALE T A++ARNIP YN SATTP+EAYPLDKIILKGEWS+LEDLY  LQE AEISA YPSFVRNRIYKL
Subjt:  AQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+RRLS + INLLISHVLVL+LFADEFSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

1.80e-254

83.37

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Query:  MADDTKSVELEENHY----ASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKE---QSRSVRARVYKHKNRPNRMQL
        MA+DTKS ELE+NHY    A+SQSPAKKKKKSEKKKKRV S++AKIQVLSN PQKTPP+V YFPSGFDPHKDA++E   +  SVRARVY+HKN+PNRMQL
Subjt:  MADDTKSVELEENHY----ASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKE---QSRSVRARVYKHKNRPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDV+E ES SV NEELS Q+KA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQ

Query:  AQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKL
        A+KLH+LKQEDDP+TK DLDG+MKNVVVNKEALE T A++ARNIP YN SATTP+EAYPLDKIILKGEWSFLED+Y  LQE AEISA YPSFVRNRIYKL
Subjt:  AQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+RRLS + INLLISHVLVL+LFADEFSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

1.0e-09

24.89

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Query:  KKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYAL
        K K  K +      +  +++L       PP+V    SGF P          + R ++ K  N+ NR   ++  T   V F   N   ++TA  +   Y L
Subjt:  KKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYAL

Query:  GVLDKATQSLKIVPIA-SNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDLDGRMKNVVVNK
         V DK  +  KIVP    N   R    ++  D    +     +  +  Q +AN    L   +GT+KS+K      A+ +E     K++  G +K+ +V+ 
Subjt:  GVLDKATQSLKIVPIA-SNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDLDGRMKNVVVNK

Query:  -----EALEGTQAEVA------RNIPAYNASATTPQEAYPLDKIILKGEWS--FLEDLYFRLQE---TAEISATYPSFVRNRIYKLQDIQDEEEKKKLCC
             EAL  TQ ++A      R IP  N  A + ++AY L+ II K E+S  +++ L     E      +   +  F+  R  +L  I++ ++K+    
Subjt:  -----EALEGTQAEVA------RNIPAYNASATTPQEAYPLDKIILKGEWS--FLEDLYFRLQE---TAEISATYPSFVRNRIYKLQDIQDEEEKKKLCC

Query:  IFSYITHLIKYK-DQHSMGDVSSAKGHKI--PSMLRQKFSSMFPTAE---SRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRLHFDN
        I  YI+ L  +   + S+G+  + +      P +L       F       S ++S+ +++ +I ++LVL L  D +S+D   +A DL          F  
Subjt:  IFSYITHLIKYK-DQHSMGDVSSAKGHKI--PSMLRQKFSSMFPTAE---SRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRLHFDN

Query:  LGCKFIR---------------KNNLSLATLPIPLQFPELRQKRRR
        +GC+ +                  N   A L IPL+FP+ R+ R R
Subjt:  LGCKFIR---------------KNNLSLATLPIPLQFPELRQKRRR

Q54FE8 DNA-directed RNA polymerase I subunit rpa49

8.3e-12

22.57

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Query:  QHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKLHALKQE--DDPETKSDLDGR
        ++  YA+G+ DK T+ LKIVP     I  ++  V G  +T + S  ++ EE     + +++++L   +G+K +KK+ QK+     E  D  +T   +D  
Subjt:  QHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKLHALKQE--DDPETKSDLDGR

Query:  MKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFR--LQETAEISATYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYIT
             V  E  +    E   ++P ++A     ++ Y ++ I+    +  L    F   + +T+E  +  P + ++++ + +DI+DEE+    C + +++ 
Subjt:  MKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFR--LQETAEISATYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYIT

Query:  H---LIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIRK
        +   L+K K  H    +      ++ + L   F S     +      DK+  + +++ + +L  ++F  +D   +A+ L  +      HF  +GCK +R 
Subjt:  H---LIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIRK

Query:  NNLSLAT-LPIPLQFPELR
         +   +  L  PL+ P+ R
Subjt:  NNLSLAT-LPIPLQFPELR

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

3.9e-97

46.31

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Query:  EENHYASSQSPAKKKKKSEK-------KKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSR---SVRARVYKHK-NRPNRMQLVVSPTG
        EE  + + Q   KK++K +K       + +    +  K+  ++ +P +  P+V YF +G+DP K   K   R   + +  VYKHK +   R+Q+VVSP G
Subjt:  EENHYASSQSPAKKKKKSEK-------KKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSR---SVRARVYKHK-NRPNRMQLVVSPTG

Query:  SNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENE-SPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKLH
        + V+FVGTNY GE  A  Q  TY +GV ++  ++L+I+P+A N I RL+P+V+  +  E E S S   +EL       R R     Y TKK+  + +K  
Subjt:  SNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENE-SPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKLH

Query:  ALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRL-QETAEISATYPSFVRNRIYKLQDIQ
        AL   DD  T+  LDG++  + VN  ALEGT + VARNIP YN +ATT  EAYPL+KII KG+WSFLED+Y+ L QET   +  YP FVRNR+Y+L+DI+
Subjt:  ALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRL-QETAEISATYPSFVRNRIYKLQDIQ

Query:  DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL
        D+ +K+ +C   + +THL+K+KD++SM    SAK HK+P + RQKF+SMF  +ES R+  DKINLLIS+VLVLSL  D F +DP DIAKDLR S  +LR 
Subjt:  DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL

Query:  HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRR
        HF  LGCKF+++N+ ++ATLP PL FPE+ ++RR
Subjt:  HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRR

Sequences

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CDS sequence

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ATGGAATCAATGGCGGACGACACGAAATCTGTTGAATTAGAAGAAAACCATTACGCAAGCTCACAGTCTCCAGCGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGAAACG
AGTTCTATCAATGGATGCTAAAATCCAAGTTCTCAGCAACCAGCCTCAGAAAACTCCGCCGGTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGCTGACA
AGGAACAGTCCCGTTCTGTAAGGGCTAGGGTTTATAAGCACAAGAACAGACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTTGGTACC
AATTATTTAGGCGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTTGATAAGGCCACCCAAAGCTTAAAGATAGTGCCTATTGCATCGAATATGAT
ATTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTACTGAAAATGAATCCCCGAGTGTGGCAAATGAAGAGCTCTCTGGGCAGGACAAAGCTAATAGAATGAGAGAGC
TCACCGCACTCTATGGAACAAAGAAGTCAAAAAAACAGGCACAGAAGCTGCATGCGTTGAAACAAGAGGATGATCCTGAAACCAAGAGCGATCTAGATGGGAGAATGAAA
AATGTGGTGGTAAACAAAGAGGCCTTGGAAGGTACGCAGGCAGAGGTTGCTCGTAATATACCAGCATATAATGCTTCTGCAACTACTCCACAAGAAGCTTACCCGCTCGA
TAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTTTATTTCCGTTTGCAAGAAACAGCTGAAATAAGTGCTACTTATCCATCCTTTGTTCGCAACAGAATTT
ATAAATTGCAAGATATTCAGGACGAGGAAGAGAAAAAGAAGCTCTGCTGCATATTTTCATATATCACTCATCTGATAAAGTATAAGGATCAGCATTCTATGGGTGATGTT
TCTTCTGCAAAGGGTCATAAAATTCCCAGCATGCTACGCCAAAAGTTCTCATCCATGTTTCCGACCGCCGAGTCGAGAAGATTGTCAGCTGATAAAATTAATCTTCTCAT
TAGCCACGTTTTGGTGCTTTCGCTATTTGCGGATGAATTCAGCAGCGATCCAGCAGACATAGCAAAGGATTTGAGAACTAGTCCTTACGATCTAAGACTCCATTTTGATA
ATTTGGGGTGCAAGTTTATACGCAAGAACAACTTGTCATTGGCTACACTTCCTATTCCCCTTCAATTTCCCGAGTTGAGGCAAAAGCGACGGCGATAG

mRNA sequence

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Protein sequence

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MESMADDTKSVELEENHYASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSPTGSNVDFVGT
NYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDLDGRMK
NVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDV
SSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

Cucsat.G3685 (gene) of Cucumber (B10) v3 genome