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Cucsat.G3717 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G3717
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDNA-directed RNA polymerase III subunit RPC7-like isoform X1
Genome locationctg1047:1429515..1434078
RNA-Seq ExpressionCucsat.G3717
SyntenyCucsat.G3717
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK03851.1 DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [Cucumis melo var. makuwa]6.00e-10993.99Show/hide
Query:  MAFRGRGRG--GGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQ
        MAFRGRGRG  GGGGSFQYAKQEPFELFPENVTLPS+ EMPEELALAMG INF+KYWKASPFYLEENVMKKMQRTEIEKFSDR K+N+TLKRDSLAQIIQ
Subjt:  MAFRGRGRG--GGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQ

Query:  LTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
        LTSRNFPEELVEGFKGKLRTKRKVQWNP+SGLKKMD LEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
Subjt:  LTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ

XP_004141787.2 DNA-directed RNA polymerase III subunit RPC7-like [Cucumis sativus]3.60e-117100Show/hide
Query:  MAFRGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQLT
        MAFRGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQLT
Subjt:  MAFRGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQLT

Query:  SRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
        SRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
Subjt:  SRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ

XP_008462407.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [Cucumis melo]3.21e-10993.99Show/hide
Query:  MAFRGRGRG--GGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQ
        MAFRGRGRG  GGGGSFQYAKQEPFELFPENVTLPS+ EMPEELALAMG INF+KYWKASPFYLEENVMKKMQRTEIEKFSDR K+N+TLKRDSLAQIIQ
Subjt:  MAFRGRGRG--GGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQ

Query:  LTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
        LTSRNFPEELVEGFKGKLRTKRKVQWNP+SGLKKMD LEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
Subjt:  LTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ

XP_022154143.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia]1.66e-9582.07Show/hide
Query:  MAFRG---RGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQII
        MAFRG   RGRGGGGG+FQYAKQEPFELFPENVTLPS+ ++PEE  L + +   + YWKASPF+LEENV+KKMQRTEIEKFSDR+KLN+TLKRDSLAQI+
Subjt:  MAFRG---RGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQII

Query:  QLTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
        QLTSRNFPEELVEGFKGKLR KRKVQWNP+SGL+K+D LEKREESLKGQDK+DKEKKEGEEGEDE++EE+DAQSEELTDDDYYQ
Subjt:  QLTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ

XP_038898864.1 glutamic acid-rich protein-like isoform X2 [Benincasa hispida]2.06e-9884.7Show/hide
Query:  MAFRGRGRG--GGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQ
        MAFRGRGRG  GGGG+FQYAKQEPFELFPENVTLP + +MPEE +LA+ +  F+ YWKASPFYLEENVMKKMQRTE+EKFSDR+K N+TLKRDSLAQI+Q
Subjt:  MAFRGRGRG--GGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQ

Query:  LTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
        LTSRNFPEELV+GFKGKLRTKRKVQWNP+SGL+K+D LEKREESLKGQDK+DKEKKEGEEGEDEDEEE+DAQSEELTDDDYYQ
Subjt:  LTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ

TrEMBL top hitse value%identityAlignment
A0A0A0KCT3 Uncharacterized protein4.34e-115100Show/hide
Query:  MAFRGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQLT
        MAFRGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQLT
Subjt:  MAFRGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQLT

Query:  SRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
        SRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
Subjt:  SRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ

A0A1S3CGV4 DNA-directed RNA polymerase III subunit1.55e-10993.99Show/hide
Query:  MAFRGRGRG--GGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQ
        MAFRGRGRG  GGGGSFQYAKQEPFELFPENVTLPS+ EMPEELALAMG INF+KYWKASPFYLEENVMKKMQRTEIEKFSDR K+N+TLKRDSLAQIIQ
Subjt:  MAFRGRGRG--GGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQ

Query:  LTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
        LTSRNFPEELVEGFKGKLRTKRKVQWNP+SGLKKMD LEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
Subjt:  LTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ

A0A5D3BVU1 DNA-directed RNA polymerase III subunit RPC7-like isoform X12.91e-10993.99Show/hide
Query:  MAFRGRGRG--GGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQ
        MAFRGRGRG  GGGGSFQYAKQEPFELFPENVTLPS+ EMPEELALAMG INF+KYWKASPFYLEENVMKKMQRTEIEKFSDR K+N+TLKRDSLAQIIQ
Subjt:  MAFRGRGRG--GGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQ

Query:  LTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
        LTSRNFPEELVEGFKGKLRTKRKVQWNP+SGLKKMD LEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
Subjt:  LTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ

A0A6J1DMV9 ribosomal L1 domain-containing protein CG13096-like8.05e-9682.07Show/hide
Query:  MAFRG---RGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQII
        MAFRG   RGRGGGGG+FQYAKQEPFELFPENVTLPS+ ++PEE  L + +   + YWKASPF+LEENV+KKMQRTEIEKFSDR+KLN+TLKRDSLAQI+
Subjt:  MAFRG---RGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQII

Query:  QLTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
        QLTSRNFPEELVEGFKGKLR KRKVQWNP+SGL+K+D LEKREESLKGQDK+DKEKKEGEEGEDE++EE+DAQSEELTDDDYYQ
Subjt:  QLTSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ

A0A6J1GNY2 glutamic acid-rich protein-like1.67e-9281.32Show/hide
Query:  MAFRGRGRG-GGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQL
        MAFRGRGRG GGGGSFQYAKQEPFELFPENVTLP++ ++PE   L + +   + YWKASPFYLEENVMKKMQ+TEIE+FSDRTK N+TLKRDSLAQI+QL
Subjt:  MAFRGRGRG-GGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQL

Query:  TSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
        TSRNFPEELVEGFKGKLR+KRKVQWNP+SGL K+D LEKREESLKGQ+K+DKEKKEGE  EDEDEE++DAQSEELTDDDYYQ
Subjt:  TSRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G01590.1 unknown protein4.2e-1534.25Show/hide
Query:  RGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQR--TEIEKFSDRTKLN-NTLKRDSLAQIIQLT
        RG+ +G GG    Y K EPF +FPE +TLP    +  +  L   +  F K+W+ SP++L +  + K ++    IE++SD  K    + K  S    + L 
Subjt:  RGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQR--TEIEKFSDRTKLN-NTLKRDSLAQIIQLT

Query:  SRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
          NFP+EL+   + + R  ++ +W+ ++ L+K+D+ EK E   K + KE+K     EEGED DEE  +++ EE  + DY Q
Subjt:  SRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ

AT4G01590.2 unknown protein4.2e-1534.25Show/hide
Query:  RGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQR--TEIEKFSDRTKLN-NTLKRDSLAQIIQLT
        RG+ +G GG    Y K EPF +FPE +TLP    +  +  L   +  F K+W+ SP++L +  + K ++    IE++SD  K    + K  S    + L 
Subjt:  RGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQR--TEIEKFSDRTKLN-NTLKRDSLAQIIQLT

Query:  SRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
          NFP+EL+   + + R  ++ +W+ ++ L+K+D+ EK E   K + KE+K     EEGED DEE  +++ EE  + DY Q
Subjt:  SRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ

AT4G01590.3 unknown protein4.2e-1534.25Show/hide
Query:  RGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQR--TEIEKFSDRTKLN-NTLKRDSLAQIIQLT
        RG+ +G GG    Y K EPF +FPE +TLP    +  +  L   +  F K+W+ SP++L +  + K ++    IE++SD  K    + K  S    + L 
Subjt:  RGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQR--TEIEKFSDRTKLN-NTLKRDSLAQIIQLT

Query:  SRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ
          NFP+EL+   + + R  ++ +W+ ++ L+K+D+ EK E   K + KE+K     EEGED DEE  +++ EE  + DY Q
Subjt:  SRNFPEELVEGFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTTAGAGGGCGAGGACGAGGTGGTGGTGGTGGGAGCTTTCAATACGCCAAGCAAGAACCTTTCGAGCTTTTCCCAGAGAATGTAACGCTACCAAGCATCGGTGA
AATGCCTGAAGAATTAGCCTTGGCTATGGGTCACATCAACTTTATGAAGTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTCATGAAAAAGATGCAAAGAACTG
AGATAGAGAAATTTTCCGATAGAACGAAGCTGAATAATACGTTGAAGCGTGATTCCCTCGCACAAATTATACAGCTCACGTCTAGGAACTTTCCTGAAGAATTGGTTGAA
GGTTTCAAAGGGAAGTTGCGGACCAAACGAAAAGTGCAATGGAACCCTGACTCAGGGCTGAAAAAAATGGACCTCCTAGAGAAGCGTGAAGAATCTCTCAAGGGACAGGA
TAAGGAGGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAAGACGAAGAAGAAGAGGATGCACAGTCCGAGGAACTTACCGATGATGATTATTATCAGGTTTTGA
CTGGAACTGTTGGATTTCGTTATATGCTTTATATAATCGTGAATCTTCTTTCCTCATTCTCCACTCTCTCGATTATAACCAATATCCTAGCAACCTCGTTCTTAATATAT
CCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATTTAGAGGGCGAGGACGAGGTGGTGGTGGTGGGAGCTTTCAATACGCCAAGCAAGAACCTTTCGAGCTTTTCCCAGAGAATGTAACGCTACCAAGCATCGGTGA
AATGCCTGAAGAATTAGCCTTGGCTATGGGTCACATCAACTTTATGAAGTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTCATGAAAAAGATGCAAAGAACTG
AGATAGAGAAATTTTCCGATAGAACGAAGCTGAATAATACGTTGAAGCGTGATTCCCTCGCACAAATTATACAGCTCACGTCTAGGAACTTTCCTGAAGAATTGGTTGAA
GGTTTCAAAGGGAAGTTGCGGACCAAACGAAAAGTGCAATGGAACCCTGACTCAGGGCTGAAAAAAATGGACCTCCTAGAGAAGCGTGAAGAATCTCTCAAGGGACAGGA
TAAGGAGGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAAGACGAAGAAGAAGAGGATGCACAGTCCGAGGAACTTACCGATGATGATTATTATCAGGTTTTGA
CTGGAACTGTTGGATTTCGTTATATGCTTTATATAATCGTGAATCTTCTTTCCTCATTCTCCACTCTCTCGATTATAACCAATATCCTAGCAACCTCGTTCTTAATATAT
CCTTGA
Protein sequenceShow/hide protein sequence
MAFRGRGRGGGGGSFQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKASPFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQLTSRNFPEELVE
GFKGKLRTKRKVQWNPDSGLKKMDLLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDDYYQVLTGTVGFRYMLYIIVNLLSSFSTLSIITNILATSFLIY
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