CuGenDBv2

Gene ID	Cucsat.G3771
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	ctg105:1058850..1074413
RNA-Seq Expression	Cucsat.G3771
Synteny	Cucsat.G3771
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016310 - phosphorylation (biological process) GO:0016311 - dephosphorylation (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003993 - acid phosphatase activity (molecular function) GO:0008168 - methyltransferase activity (molecular function) GO:0016301 - kinase activity (molecular function) GO:0016491 - oxidoreductase activity (molecular function) GO:0052745 - inositol phosphate phosphatase activity (molecular function)
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022152756.1 uncharacterized protein LOC111020399 [Momordica charantia]

6.78e-70

58.5

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Query:  YLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKE
        Y NPYFLHH+DNT+LVLV++ LT ENY SWSR+M I L+VKNK+GFVDG+I RPTGDLL  WI  NN+VISWILNS+SK ISA+ILFSD AR IW++LKE
Subjt:  YLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKE

Query:  RFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCGTCTCDGLKEMADFLQMEYLVDFLWDSMRIFSRHKLNSYLWILFHLQAEP
        RF+K+N PRIFQL+R L+ L Q+Q S+  YFT  KTL+ ELN+Y P+C  G C+C G+KE+  F Q E+++ FL      FS+ ++   L     ++ EP
Subjt:  RFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCGTCTCDGLKEMADFLQMEYLVDFLWDSMRIFSRHKLNSYLWILFHLQAEP

XP_022154608.1 uncharacterized protein LOC111021831 [Momordica charantia]

5.34e-69

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Query:  LNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKER
        LNPY+LHH DNT LVLVT+ LTEENY SWSR+M I LS+KNK+GF+DG+I+RP G+LLP WI NN++VI+WILNSVSK IS++ILFS+ AR IW++LKER
Subjt:  LNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKER

Query:  FQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCG
        F+K N PRIFQLKR LA L QNQ S+ +YFTK K ++DEL  YRP C+C 
Subjt:  FQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCG

XP_031736904.1 uncharacterized protein LOC105434586 isoform X1 [Cucumis sativus]

1.59e-108

91.3

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Query:  MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWI
        MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWI
Subjt:  MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWI

Query:  RNNNIVISWILNSVSKPISANILFSDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPA
        RNNNIVISWILNSVSKPISANILFSDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIG   T     +   + Y+P+
Subjt:  RNNNIVISWILNSVSKPISANILFSDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPA

XP_031736905.1 uncharacterized protein LOC105434586 isoform X2 [Cucumis sativus]

4.42e-109

91.3

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Query:  MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWI
        MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWI
Subjt:  MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWI

Query:  RNNNIVISWILNSVSKPISANILFSDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPA
        RNNNIVISWILNSVSKPISANILFSDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIG   T     +   + Y+P+
Subjt:  RNNNIVISWILNSVSKPISANILFSDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPA

XP_031736906.1 uncharacterized protein LOC105434586 isoform X3 [Cucumis sativus]

4.27e-109

91.3

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Query:  MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWI
        MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWI
Subjt:  MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWI

Query:  RNNNIVISWILNSVSKPISANILFSDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPA
        RNNNIVISWILNSVSKPISANILFSDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIG   T     +   + Y+P+
Subjt:  RNNNIVISWILNSVSKPISANILFSDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPA

TrEMBL top hits

e value

%identity

Alignment

A0A5J5B2C5 Uncharacterized protein

8.05e-67

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Query:  NPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTG---DLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELK
        NPY+LHH+++   VLV++QLT ENY +WSRAM I LSVKNK+GFVDG I  P G   +LL  WIRNNNIVISWILNS+SK ISA+I+F+  AR IW++L+
Subjt:  NPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTG---DLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELK

Query:  ERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCGTCTCDGLKEMADFLQMEYLVDFL
        +RFQ++N PRIFQLKR L  L Q Q S+ +YFTK KT+++EL+ YRP C+CG C C G+K + D+ Q EY++ FL
Subjt:  ERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCGTCTCDGLKEMADFLQMEYLVDFL

A0A5J5BKC2 Uncharacterized protein

9.33e-67

60.57

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Query:  NPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTG---DLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELK
        NPY+LHH+D+   +LV++QLT ENY +WSRAM I LSVKNK+GFVDG+I  P G   +LL  WIRNNNIVISWILNSVSK ISA+I+F+  AR IW++L+
Subjt:  NPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTG---DLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELK

Query:  ERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCGTCTCDGLKEMADFLQMEYLVDFL
        +RFQ++N PRIFQLKR L  L Q Q S+ +YFTK KT+++EL+ YR  C+CG C+C G+K + D  QMEY++ FL
Subjt:  ERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCGTCTCDGLKEMADFLQMEYLVDFL

A0A6J1DIP8 uncharacterized protein LOC111020399

3.28e-70

58.5

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Query:  YLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKE
        Y NPYFLHH+DNT+LVLV++ LT ENY SWSR+M I L+VKNK+GFVDG+I RPTGDLL  WI  NN+VISWILNS+SK ISA+ILFSD AR IW++LKE
Subjt:  YLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKE

Query:  RFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCGTCTCDGLKEMADFLQMEYLVDFLWDSMRIFSRHKLNSYLWILFHLQAEP
        RF+K+N PRIFQL+R L+ L Q+Q S+  YFT  KTL+ ELN+Y P+C  G C+C G+KE+  F Q E+++ FL      FS+ ++   L     ++ EP
Subjt:  RFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCGTCTCDGLKEMADFLQMEYLVDFLWDSMRIFSRHKLNSYLWILFHLQAEP

A0A6J1DKR8 uncharacterized protein LOC111021831

2.59e-69

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Query:  LNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKER
        LNPY+LHH DNT LVLVT+ LTEENY SWSR+M I LS+KNK+GF+DG+I+RP G+LLP WI NN++VI+WILNSVSK IS++ILFS+ AR IW++LKER
Subjt:  LNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKER

Query:  FQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCG
        F+K N PRIFQLKR LA L QNQ S+ +YFTK K ++DEL  YRP C+C 
Subjt:  FQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCG

A0A6J1DLQ9 uncharacterized protein LOC111022117

3.24e-68

58.33

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Query:  LHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKERFQKKN
        +HHND +NLVLV++ LT  NYVSWSR+MTI LS+KNK+GF++G++ +P GDLLPVWIRN ++VI+W LNSVSKPISA+++F++    IW++LK+RFQ +N
Subjt:  LHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKERFQKKN

Query:  APRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCGTCTCDGLKEMADFLQMEYLVDFL
         P+IFQL+R LATL+Q+Q S+ MY+TK K L+DE  +YRP C CG+C+C G + +  F+Q E+L+ FL
Subjt:  APRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCGTCTCDGLKEMADFLQMEYLVDFL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

4.6e-23

30.69

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Query:  SAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPT--GDLLPVWIRNNNIVISWILNSVSKPISANILF
        S   + D +  Y  P  +HH  + ++  +++   E+NYV+W       L V  K GF+DGT+ +P     L   W + N +V+ W++NS++  +  ++++
Subjt:  SAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPT--GDLLPVWIRNNNIVISWILNSVSKPISANILF

Query:  SDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYR--PACNCGTCTCDGLKEMADFLQMEYLVDFL
        ++ A  +W +L+  F      +I+QL+R LATL Q  DS+  YF K   ++ EL+ Y   P C CG C C+  K   +  + E   +FL
Subjt:  SDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYR--PACNCGTCTCDGLKEMADFLQMEYLVDFL

Sequences

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CDS sequence

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ATGACGACTCCGACCATCAATGTGTCACACACCTCGCCGAAAAACCAAGAAAATCCCAATTCAAATCAGTCTGATACCTCCGCCCAAACCTCTTTCGATCAAAACCAAGG
ATATTTGAATCCTTATTTCCTTCATCACAACGATAATACAAACTTAGTACTTGTCACGGAGCAGTTGACTGAGGAGAATTACGTCTCTTGGAGCCGAGCAATGACCATTG
GACTCTCTGTGAAGAATAAGATTGGTTTCGTTGATGGAACTATCGCACGACCAACTGGAGATCTCCTTCCAGTCTGGATCAGAAATAACAATATTGTTATTTCTTGGATA
CTAAACTCAGTCTCCAAACCCATCTCAGCCAATATTCTCTTCTCAGATTTGGCAAGAACAATATGGGTAGAGCTCAAGGAAAGATTCCAAAAGAAGAATGCCCCAAGGAT
ATTTCAATTGAAACGATCCCTGGCAACACTATCACAAAACCAAGACTCCATTGGTATGTACTTTACTAAGTTCAAAACTTTGTTTGATGAATTAAATACATACAGACCAG
CCTGCAACTGTGGAACTTGTACTTGTGATGGCCTAAAAGAAATGGCAGACTTCCTTCAGATGGAGTATCTCGTGGATTTCTTATGGGACTCAATGAGAATTTTTTCCAGG
CACAAGCTCAACTCCTACTTATGGATCCTCTTCCATCTACAAGCCGAGCCTATTCTCTTCTCCTAA

mRNA sequence

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Protein sequence

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MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVISWI
LNSVSKPISANILFSDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIGMYFTKFKTLFDELNTYRPACNCGTCTCDGLKEMADFLQMEYLVDFLWDSMRIFSR
HKLNSYLWILFHLQAEPILFS

Cucsat.G3771 (gene) of Cucumber (B10) v3 genome