; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G3949 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G3949
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionnuclear pore complex protein NUP160
Genome locationctg105:546461..546970
RNA-Seq ExpressionCucsat.G3949
SyntenyCucsat.G3949
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0033036 - macromolecule localization (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0071702 - organic substance transport (biological process)
GO:0071705 - nitrogen compound transport (biological process)
GO:0005643 - nuclear pore (cellular component)
InterPro domainsIPR021717 - Nucleoporin Nup120/160


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ95575.1 nuclear pore complex protein NUP160 isoform X5 [Cucumis melo var. makuwa]1.23e-7595.35Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        ILCCGELPFIGLAEKVEQELVWKAERSD+LSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARL+TEGALGDN FSSSLVLERLN LSAAINALHLVHPDF
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
         WIEPL ERDAIQSKHYPSKKAKRTVDEQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ

XP_008457193.1 PREDICTED: nuclear pore complex protein NUP160 isoform X2 [Cucumis melo]5.36e-7495.35Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        ILCCGELPFIGLAEKVEQELVWKAERSD+LSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARL+TEGALGDN FSSSLVLERLN LSAAINALHLVHPDF
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
         WIEPL ERDAIQSKHYPSKKAKRTVDEQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ

XP_008457194.1 PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Cucumis melo]5.36e-7495.35Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        ILCCGELPFIGLAEKVEQELVWKAERSD+LSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARL+TEGALGDN FSSSLVLERLN LSAAINALHLVHPDF
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
         WIEPL ERDAIQSKHYPSKKAKRTVDEQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ

XP_011649106.1 nuclear pore complex protein NUP160 isoform X1 [Cucumis sativus]2.57e-78100Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
        MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ

XP_011649107.1 nuclear pore complex protein NUP160 isoform X2 [Cucumis sativus]2.57e-78100Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
        MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ

TrEMBL top hitse value%identityAlignment
A0A0A0LI10 DUF5311 domain-containing protein1.20e-79100Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
        MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ

A0A1S3C4Y2 nuclear pore complex protein NUP160 isoform X22.60e-7495.35Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        ILCCGELPFIGLAEKVEQELVWKAERSD+LSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARL+TEGALGDN FSSSLVLERLN LSAAINALHLVHPDF
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
         WIEPL ERDAIQSKHYPSKKAKRTVDEQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ

A0A1S3C511 nuclear pore complex protein NUP160 isoform X12.60e-7495.35Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        ILCCGELPFIGLAEKVEQELVWKAERSD+LSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARL+TEGALGDN FSSSLVLERLN LSAAINALHLVHPDF
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
         WIEPL ERDAIQSKHYPSKKAKRTVDEQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ

A0A1S3C5M5 nuclear pore complex protein NUP160 isoform X32.59e-7495.35Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        ILCCGELPFIGLAEKVEQELVWKAERSD+LSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARL+TEGALGDN FSSSLVLERLN LSAAINALHLVHPDF
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
         WIEPL ERDAIQSKHYPSKKAKRTVDEQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ

A0A5D3BAR5 Nuclear pore complex protein NUP160 isoform X55.95e-7695.35Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        ILCCGELPFIGLAEKVEQELVWKAERSD+LSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARL+TEGALGDN FSSSLVLERLN LSAAINALHLVHPDF
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
         WIEPL ERDAIQSKHYPSKKAKRTVDEQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ

SwissProt top hitse value%identityAlignment
Q12769 Nuclear pore complex protein Nup1609.1e-0731.43Show/hide
Query:  ELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLS-------AAINALHLVHP
        E P++ L  +V   +  +A   D+++  + Y+LLYAF I+RHN++KA + ++ Y  RL  E             +  L GL        AA+N L L+ P
Subjt:  ELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLS-------AAINALHLVHP

Query:  DFMWI
        ++ WI
Subjt:  DFMWI

Q9C811 Nuclear pore complex protein NUP1602.1e-3558.14Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        IL  G LPFIGL EK+ QEL WKA RSDI+ +P+ YKLLYA+E+ RHNW+ AASY+Y +SARL++EGA  D    S ++ ERLNGLSAA+NAL LVHP +
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
         WI+P+ E    ++  YP KKA+R  +EQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ

Q9Z0W3 Nuclear pore complex protein Nup1605.3e-0732.38Show/hide
Query:  ELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLS-------AAINALHLVHP
        E P++ L  +V   +  +A   D+++  + Y+LLYAF I+RHN++KA + ++ Y  RL  E             +  L GL        AAIN L L+ P
Subjt:  ELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLS-------AAINALHLVHP

Query:  DFMWI
        ++ WI
Subjt:  DFMWI

Arabidopsis top hitse value%identityAlignment
AT1G33410.1 SUPPRESSOR OF AUXIN RESISTANCE11.5e-3658.14Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        IL  G LPFIGL EK+ QEL WKA RSDI+ +P+ YKLLYA+E+ RHNW+ AASY+Y +SARL++EGA  D    S ++ ERLNGLSAA+NAL LVHP +
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
         WI+P+ E    ++  YP KKA+R  +EQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ

AT1G33410.2 SUPPRESSOR OF AUXIN RESISTANCE11.5e-3658.14Show/hide
Query:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF
        IL  G LPFIGL EK+ QEL WKA RSDI+ +P+ YKLLYA+E+ RHNW+ AASY+Y +SARL++EGA  D    S ++ ERLNGLSAA+NAL LVHP +
Subjt:  ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDF

Query:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ
         WI+P+ E    ++  YP KKA+R  +EQ
Subjt:  MWIEPLFERDAIQSKHYPSKKAKRTVDEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCTTTGTTGTGGTGAATTACCGTTCATTGGATTAGCAGAAAAGGTAGAGCAGGAGCTTGTATGGAAGGCAGAACGTTCTGATATTTTGTCAAGGCCAAGCTTGTATAA
GTTGCTGTATGCGTTTGAAATACACCGACATAATTGGCAGAAAGCAGCAAGTTATATCTACCTTTATTCGGCTCGTTTGAAAACGGAAGGAGCTCTGGGAGATAACCATT
TCAGTTCATCATTGGTGTTGGAACGATTGAATGGCCTTTCTGCTGCTATTAATGCATTGCACCTTGTTCATCCTGATTTTATGTGGATTGAACCCCTGTTTGAAAGAGAT
GCTATTCAGAGTAAGCACTACCCAAGTAAGAAAGCTAAAAGAACTGTTGATGAACAG
mRNA sequenceShow/hide mRNA sequence
ATTCTTTGTTGTGGTGAATTACCGTTCATTGGATTAGCAGAAAAGGTAGAGCAGGAGCTTGTATGGAAGGCAGAACGTTCTGATATTTTGTCAAGGCCAAGCTTGTATAA
GTTGCTGTATGCGTTTGAAATACACCGACATAATTGGCAGAAAGCAGCAAGTTATATCTACCTTTATTCGGCTCGTTTGAAAACGGAAGGAGCTCTGGGAGATAACCATT
TCAGTTCATCATTGGTGTTGGAACGATTGAATGGCCTTTCTGCTGCTATTAATGCATTGCACCTTGTTCATCCTGATTTTATGTGGATTGAACCCCTGTTTGAAAGAGAT
GCTATTCAGAGTAAGCACTACCCAAGTAAGAAAGCTAAAAGAACTGTTGATGAACAG
Protein sequenceShow/hide protein sequence
ILCCGELPFIGLAEKVEQELVWKAERSDILSRPSLYKLLYAFEIHRHNWQKAASYIYLYSARLKTEGALGDNHFSSSLVLERLNGLSAAINALHLVHPDFMWIEPLFERD
AIQSKHYPSKKAKRTVDEQ