CuGenDBv2

Gene ID	Cucsat.G3952
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	nuclear pore complex protein NUP160
Genome location	ctg105:592976..593834
RNA-Seq Expression	Cucsat.G3952
Synteny	Cucsat.G3952
Gene Ontology terms	GO:0006913 - nucleocytoplasmic transport (biological process) GO:0033036 - macromolecule localization (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0071702 - organic substance transport (biological process) GO:0071705 - nitrogen compound transport (biological process) GO:0005643 - nuclear pore (cellular component)
InterPro domains	IPR021717 - Nucleoporin Nup120/160

Homology

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GenBank top hits

e value

%identity

Alignment

TYJ95573.1 nuclear pore complex protein NUP160 isoform X5 [Cucumis melo var. makuwa]

6.47e-83

94.41

Show/hide

Query:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
        MGRRMPLAGMETS+MA DSVEFIGVSVPSSSSR+A+ITSVASQATTSLTEDH SCVVVGDPPTYLIW IRKILPHVVELLEFSTSNEF R GLRIAFPET
Subjt:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET

Query:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
        LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
Subjt:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV

XP_008457197.1 PREDICTED: nuclear pore complex protein NUP160 isoform X5 [Cucumis melo]

1.08e-79

94.41

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Query:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
        MGRRMPLAGMETS+MA DSVEFIGVSVPSSSSR+A+ITSVASQATTSLTEDH SCVVVGDPPTYLIW IRKILPHVVELLEFSTSNEF R GLRIAFPET
Subjt:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET

Query:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
        LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
Subjt:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV

XP_011649106.1 nuclear pore complex protein NUP160 isoform X1 [Cucumis sativus]

3.03e-85

100

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Query:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
        MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
Subjt:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET

Query:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
        LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
Subjt:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV

XP_011649107.1 nuclear pore complex protein NUP160 isoform X2 [Cucumis sativus]

3.02e-85

100

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Query:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
        MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
Subjt:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET

Query:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
        LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
Subjt:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV

XP_011649109.1 nuclear pore complex protein NUP160 isoform X3 [Cucumis sativus]

2.95e-85

100

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Query:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
        MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
Subjt:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET

Query:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
        LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
Subjt:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LLC2 Uncharacterized protein

4.88e-93

100

Show/hide

Query:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
        MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
Subjt:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET

Query:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
        LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
Subjt:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV

A0A1S3C516 nuclear pore complex protein NUP160 isoform X5

5.23e-80

94.41

Show/hide

Query:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
        MGRRMPLAGMETS+MA DSVEFIGVSVPSSSSR+A+ITSVASQATTSLTEDH SCVVVGDPPTYLIW IRKILPHVVELLEFSTSNEF R GLRIAFPET
Subjt:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET

Query:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
        LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
Subjt:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV

A0A1S3C5M5 nuclear pore complex protein NUP160 isoform X3

5.29e-80

94.41

Show/hide

Query:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
        MGRRMPLAGMETS+MA DSVEFIGVSVPSSSSR+A+ITSVASQATTSLTEDH SCVVVGDPPTYLIW IRKILPHVVELLEFSTSNEF R GLRIAFPET
Subjt:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET

Query:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
        LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
Subjt:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV

A0A1S3C685 nuclear pore complex protein NUP160 isoform X4

5.25e-80

94.41

Show/hide

Query:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
        MGRRMPLAGMETS+MA DSVEFIGVSVPSSSSR+A+ITSVASQATTSLTEDH SCVVVGDPPTYLIW IRKILPHVVELLEFSTSNEF R GLRIAFPET
Subjt:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET

Query:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
        LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
Subjt:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV

A0A5D3B8G5 Nuclear pore complex protein NUP160 isoform X5

3.13e-83

94.41

Show/hide

Query:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET
        MGRRMPLAGMETS+MA DSVEFIGVSVPSSSSR+A+ITSVASQATTSLTEDH SCVVVGDPPTYLIW IRKILPHVVELLEFSTSNEF R GLRIAFPET
Subjt:  MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPET

Query:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
        LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV
Subjt:  LHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV

SwissProt top hits

e value

%identity

Alignment

Q9C811 Nuclear pore complex protein NUP160

3.7e-17

37.93

Show/hide

Query:  RRMPLAGMETSIMATDS-VEFIGVSVPSSSSREAAITSVASQ----ATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAF
        RR P AGME  +    + V++I +SVPS S   ++I + +S+        L+ED+ S  V+G+P    +WRI K  P+ +ELL+ S  + F  TGLR  F
Subjt:  RRMPLAGMETSIMATDS-VEFIGVSVPSSSSREAAITSVASQ----ATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAF

Query:  PETLHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSY
         +TL P  FV  +E   S    + +Y++T SG  Y LKL N  +Y
Subjt:  PETLHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSY

Arabidopsis top hits

e value

%identity

Alignment

AT1G33410.1 SUPPRESSOR OF AUXIN RESISTANCE1

2.6e-18

37.93

Show/hide

Query:  RRMPLAGMETSIMATDS-VEFIGVSVPSSSSREAAITSVASQ----ATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAF
        RR P AGME  +    + V++I +SVPS S   ++I + +S+        L+ED+ S  V+G+P    +WRI K  P+ +ELL+ S  + F  TGLR  F
Subjt:  RRMPLAGMETSIMATDS-VEFIGVSVPSSSSREAAITSVASQ----ATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAF

Query:  PETLHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSY
         +TL P  FV  +E   S    + +Y++T SG  Y LKL N  +Y
Subjt:  PETLHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSY

AT1G33410.2 SUPPRESSOR OF AUXIN RESISTANCE1

2.6e-18

37.93

Show/hide

Query:  RRMPLAGMETSIMATDS-VEFIGVSVPSSSSREAAITSVASQ----ATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAF
        RR P AGME  +    + V++I +SVPS S   ++I + +S+        L+ED+ S  V+G+P    +WRI K  P+ +ELL+ S  + F  TGLR  F
Subjt:  RRMPLAGMETSIMATDS-VEFIGVSVPSSSSREAAITSVASQ----ATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAF

Query:  PETLHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSY
         +TL P  FV  +E   S    + +Y++T SG  Y LKL N  +Y
Subjt:  PETLHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSY

Sequences

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CDS sequence

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ATGGGGCGTAGGATGCCGTTGGCCGGAATGGAAACCTCTATCATGGCTACCGACTCTGTAGAATTCATTGGCGTTTCTGTTCCTTCTTCCTCATCAAGAGAGGCTGCCAT
TACTTCCGTTGCTTCTCAAGCTACCACCTCATTGACTGAGGACCATACCTCCTGCGTTGTCGTAGGAGATCCTCCAACCTATCTTATCTGGAGGATTCGGAAGATTCTAC
CTCATGTAGTAGAGTTGCTTGAGTTTTCAACTTCCAACGAGTTTTGTAGGACTGGTTTGCGAATTGCCTTTCCTGAAACACTTCACCCGGCCGTTTTTGTTTGCAAAAAT
GAGATTAGTTCGTCTATGGGACATCCTTTCTTGATGTATGCAGTGACTTCGTCCGGTTTCGCTTATTGTTTGAAGCTGCGAAATCTATCCTCATATGTA

mRNA sequence

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Protein sequence

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MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKN
EISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYV

Cucsat.G3952 (gene) of Cucumber (B10) v3 genome