; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G4078 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G4078
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRibosome biogenesis protein BRX1-like
Genome locationctg105:3681852..3684915
RNA-Seq ExpressionCucsat.G4078
SyntenyCucsat.G4078
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR007109 - Brix domain
IPR026532 - Ribosome biogenesis protein BRX1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008450669.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo]8.63e-8690.14Show/hide
Query:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
        MAKKRKHSE++PTVSVKKD++A ERPKRTLMGWKDK+VTK+SE GSDHAVFRNKEKVL+TCSRRINFRY HLMLNMVSLLPHCKKDNKVE RS+KGATLN
Subjt:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN

Query:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI
        ELVELKGCSSSLFFECRKHKDLYL MAKCPSGPSVKFLVNA+
Subjt:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI

XP_011659901.2 ribosome biogenesis protein BRX1 homolog 1 [Cucumis sativus]9.29e-9397.16Show/hide
Query:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
        MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVL+TCSRRINFRY HLMLNMVSLLPHCKKDNKVE RS+KGATLN
Subjt:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN

Query:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNA
        ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNA
Subjt:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNA

XP_022159792.1 ribosome biogenesis protein BRX1 homolog 1-like [Momordica charantia]3.60e-8590.14Show/hide
Query:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
        MAKKRKHSE+L +V+VKKD DAPERPKRTLMGWKDK+V KESE GSDHAVFRNKEKVL+TCSRRINFRY HLMLNMVSLLPHCKKDNKVE RS+KGATLN
Subjt:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN

Query:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI
        ELVELKGCSSSLFFECRKHKDLYL MAKCPSGPSVKFLVNA+
Subjt:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI

XP_031736511.1 ribosome biogenesis protein BRX1 homolog 1-like isoform X1 [Cucumis sativus]1.07e-104100Show/hide
Query:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
        MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
Subjt:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN

Query:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAICFLYC
        ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAICFLYC
Subjt:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAICFLYC

XP_031744340.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucumis sativus]6.20e-10499.32Show/hide
Query:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
        MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRS+KGATLN
Subjt:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN

Query:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAICFLYC
        ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAICFLYC
Subjt:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAICFLYC

TrEMBL top hitse value%identityAlignment
A0A1S3BQS3 ribosome biogenesis protein BRX1-like4.18e-8690.14Show/hide
Query:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
        MAKKRKHSE++PTVSVKKD++A ERPKRTLMGWKDK+VTK+SE GSDHAVFRNKEKVL+TCSRRINFRY HLMLNMVSLLPHCKKDNKVE RS+KGATLN
Subjt:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN

Query:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI
        ELVELKGCSSSLFFECRKHKDLYL MAKCPSGPSVKFLVNA+
Subjt:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI

A0A5D3CG95 Ribosome biogenesis protein BRX1-like4.18e-8690.14Show/hide
Query:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
        MAKKRKHSE++PTVSVKKD++A ERPKRTLMGWKDK+VTK+SE GSDHAVFRNKEKVL+TCSRRINFRY HLMLNMVSLLPHCKKDNKVE RS+KGATLN
Subjt:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN

Query:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI
        ELVELKGCSSSLFFECRKHKDLYL MAKCPSGPSVKFLVNA+
Subjt:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI

A0A6J1E0T2 ribosome biogenesis protein BRX1 homolog 1-like1.74e-8590.14Show/hide
Query:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
        MAKKRKHSE+L +V+VKKD DAPERPKRTLMGWKDK+V KESE GSDHAVFRNKEKVL+TCSRRINFRY HLMLNMVSLLPHCKKDNKVE RS+KGATLN
Subjt:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN

Query:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI
        ELVELKGCSSSLFFECRKHKDLYL MAKCPSGPSVKFLVNA+
Subjt:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI

A0A6J1EW75 ribosome biogenesis protein BRX1 homolog 1-like1.82e-8286.62Show/hide
Query:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
        M KKRKHSE+LP VSVKKD+ APERPKRTL GWKDK+V KE+E GSDHAVFRNKEKVL+TCSRRINFRY HLMLN+VSLLPHCKKDNKVE RS+KGATLN
Subjt:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN

Query:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI
        ELVELKGCSS LFFECRKHKDLYL M+KCPSGPSVKFLVNA+
Subjt:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI

A0A6J1HZ18 ribosome biogenesis protein BRX1 homolog 1-like3.45e-8288.03Show/hide
Query:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
        M KKRKHSE+LP VSVKKDD APER KRTL GWKDK+VT +SE  SDHAVFRNKEKVL+TCSRRINFRY HLMLNMVSLLPHCKKDNKVE RS KGATLN
Subjt:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN

Query:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI
        ELVELKGCSSSLFFECRKHKDLYL MAKCPSGPSVKFLVNA+
Subjt:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI

SwissProt top hitse value%identityAlignment
P34524 Ribosome biogenesis protein BRX1 homolog1.2e-1539.25Show/hide
Query:  KKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLNELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSV
        K+ T+E+   ++  ++ N+E+VL+ CSR  + R  +LM ++  LLPH K D+K++ + +    LNE+ E+K C+  ++FE RK KD YL M+    GPS+
Subjt:  KKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLNELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSV

Query:  KFLVNAI
        KFLV+ +
Subjt:  KFLVNAI

Q08235 Ribosome biogenesis protein BRX16.5e-1743.82Show/hide
Query:  FRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLNELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLV
        F NK++ L+  SR +N+R+ HL+ ++  LLPH +K+ K++ + +    LNE+ EL  C++ LFFE RKH+DLYL ++K P+GP++KF +
Subjt:  FRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLNELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLV

Q9C928 Ribosome biogenesis protein BRX1 homolog 21.3e-4665.97Show/hide
Query:  MAKKRKHSESLPTVSVKKDDD-APERPKRTLMGWKDKKVTK-ESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGAT
        M +KRKHSE+     VKK D+ AP+RPKRTL+GWKDK   + E       + F+NKEKVL+TCSRRI+FRY  LMLN+VSLLPHCKKD+KVE +S+KGAT
Subjt:  MAKKRKHSESLPTVSVKKDDD-APERPKRTLMGWKDKKVTK-ESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGAT

Query:  LNELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI
        LNEL+ELK  +S LFFECRKHKDLY+ M K P+GPSVKFLV A+
Subjt:  LNELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI

Q9HGL6 Ribosome biogenesis protein brx11.2e-1546.51Show/hide
Query:  KEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLNELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLV
        K+KVL+  SR + +R  HL+ ++VS++PH KKD+K++ + ++   LNEL EL  C++  FFE R+ +DLYL +A+ P+GP+VKF V
Subjt:  KEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLNELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLV

Q9LE16 Ribosome biogenesis protein BRX1 homolog 11.2e-5271.83Show/hide
Query:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
        M +KRKHSE++    VK  D APERP+RTL+GWKDKK   E+   +  +VFRNKEKVL+TCSRRINFRY HLMLNMVSLLPHCKKD+KVE +S++GATLN
Subjt:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN

Query:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI
        EL+ELKG SS LFFECRKHKDLY+ M K P GPSVKFLVNA+
Subjt:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI

Arabidopsis top hitse value%identityAlignment
AT1G52930.1 Ribosomal RNA processing Brix domain protein9.5e-4865.97Show/hide
Query:  MAKKRKHSESLPTVSVKKDDD-APERPKRTLMGWKDKKVTK-ESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGAT
        M +KRKHSE+     VKK D+ AP+RPKRTL+GWKDK   + E       + F+NKEKVL+TCSRRI+FRY  LMLN+VSLLPHCKKD+KVE +S+KGAT
Subjt:  MAKKRKHSESLPTVSVKKDDD-APERPKRTLMGWKDKKVTK-ESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGAT

Query:  LNELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI
        LNEL+ELK  +S LFFECRKHKDLY+ M K P+GPSVKFLV A+
Subjt:  LNELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI

AT3G15460.1 Ribosomal RNA processing Brix domain protein8.9e-5471.83Show/hide
Query:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN
        M +KRKHSE++    VK  D APERP+RTL+GWKDKK   E+   +  +VFRNKEKVL+TCSRRINFRY HLMLNMVSLLPHCKKD+KVE +S++GATLN
Subjt:  MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLN

Query:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI
        EL+ELKG SS LFFECRKHKDLY+ M K P GPSVKFLVNA+
Subjt:  ELVELKGCSSSLFFECRKHKDLYLCMAKCPSGPSVKFLVNAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAA
AGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTCGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATTGGCATTTGATGT
TGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTTGAGGTCCAACAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCC
AGCCTATTTTTTGAGTGCAGAAAACATAAAGATCTTTATCTATGTATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCATTTGTTTTCTCTATTG
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAA
AGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTCGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATTGGCATTTGATGT
TGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTTGAGGTCCAACAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCC
AGCCTATTTTTTGAGTGCAGAAAACATAAAGATCTTTATCTATGTATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCATTTGTTTTCTCTATTG
TTGA
Protein sequenceShow/hide protein sequence
MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLNELVELKGCSS
SLFFECRKHKDLYLCMAKCPSGPSVKFLVNAICFLYC