; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G4223 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G4223
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptiontRNA(Ile)-2-lysyl-cytidine synthase
Genome locationctg1080:185701..186874
RNA-Seq ExpressionCucsat.G4223
SyntenyCucsat.G4223
Gene Ontology termsGO:0006400 - tRNA modification (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0010098 - suspensor development (biological process)
GO:0005524 - ATP binding (molecular function)
GO:0016879 - ligase activity, forming carbon-nitrogen bonds (molecular function)
InterPro domainsIPR011063 - tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal
IPR012094 - tRNA(Ile)-lysidine synthase
IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652970.1 hypothetical protein Csa_021114 [Cucumis sativus]2.36e-129100Show/hide
Query:  MAQGLIQTGTNHSFFFLSSKSKIAISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMD
        MAQGLIQTGTNHSFFFLSSKSKIAISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMD
Subjt:  MAQGLIQTGTNHSFFFLSSKSKIAISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMD

Query:  GLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
        GLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
Subjt:  GLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL

XP_008462678.1 PREDICTED: uncharacterized protein LOC103500981 [Cucumis melo]1.51e-10787.18Show/hide
Query:  MAQGLIQTGTNHSFFFLSSKSKIAIS-----FILPSFHLRV--LPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVL
        MAQGLIQTGTNHSFFF SSKSK  +      FILPS  LR+  LPLPRCFCSYSSLQQ IDL NYRE FSKRMDMAGLKPHH IALGVSGGPDSMALCVL
Subjt:  MAQGLIQTGTNHSFFFLSSKSKIAIS-----FILPSFHLRV--LPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVL

Query:  TAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
        TAGWKMDGLGTSCKSST +DGLLAIVVDHGLRAESR EA+VV NRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQH IGVIL
Subjt:  TAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL

XP_031740386.1 uncharacterized protein LOC116403403 isoform X1 [Cucumis sativus]2.05e-127100Show/hide
Query:  MAQGLIQTGTNHSFFFLSSKSKIAISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMD
        MAQGLIQTGTNHSFFFLSSKSKIAISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMD
Subjt:  MAQGLIQTGTNHSFFFLSSKSKIAISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMD

Query:  GLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
        GLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
Subjt:  GLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL

XP_031740411.1 uncharacterized protein LOC116403403 isoform X8 [Cucumis sativus]2.30e-131100Show/hide
Query:  MAQGLIQTGTNHSFFFLSSKSKIAISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMD
        MAQGLIQTGTNHSFFFLSSKSKIAISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMD
Subjt:  MAQGLIQTGTNHSFFFLSSKSKIAISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMD

Query:  GLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
        GLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
Subjt:  GLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL

XP_038879702.1 uncharacterized protein LOC120071467 [Benincasa hispida]3.54e-9980.61Show/hide
Query:  MAQGLI---QTGTNHSFFFLSSKSKIAIS-----FILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCV
        MAQGLI   QTGTNHSFF LS K K  +      F+LP   LR+LPLPRCFC YSSLQ+PIDLC YRE FSKRMDMAGLKPHHRIALGVSGGPDSMALCV
Subjt:  MAQGLI---QTGTNHSFFFLSSKSKIAIS-----FILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCV

Query:  LTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
        LTA WKMDGL  + +SST +DGLLAIVVDHGLRAESRDEAKVV NR+TQLGIRCE+ASCDW+NG+PKQGHLQEAARDMRYQMLQKVCVQH IGVIL
Subjt:  LTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL

TrEMBL top hitse value%identityAlignment
A0A1S3CJ33 tRNA(Ile)-2-lysyl-cytidine synthase7.29e-10887.18Show/hide
Query:  MAQGLIQTGTNHSFFFLSSKSKIAIS-----FILPSFHLRV--LPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVL
        MAQGLIQTGTNHSFFF SSKSK  +      FILPS  LR+  LPLPRCFCSYSSLQQ IDL NYRE FSKRMDMAGLKPHH IALGVSGGPDSMALCVL
Subjt:  MAQGLIQTGTNHSFFFLSSKSKIAIS-----FILPSFHLRV--LPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVL

Query:  TAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
        TAGWKMDGLGTSCKSST +DGLLAIVVDHGLRAESR EA+VV NRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQH IGVIL
Subjt:  TAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL

A0A5A7TYZ5 tRNA(Ile)-2-lysyl-cytidine synthase2.77e-7294.31Show/hide
Query:  MDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQE
        MDMAGLKPHH IALGVSGGPDSMALCVLTAGWKMDGLGTSCKSST +DGLLAIVVDHGLRAESR EA+VV NRVTQLGIRCELASCDWINGRPKQGHLQE
Subjt:  MDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQE

Query:  AARDMRYQMLQKVCVQHNIGVIL
        AARDMRYQMLQKVCVQH IGVIL
Subjt:  AARDMRYQMLQKVCVQHNIGVIL

A0A6J1CVA6 tRNA(Ile)-2-lysyl-cytidine synthase1.13e-9277.04Show/hide
Query:  MAQGLI---QTGTNHSFFFLSSKSKIA-----ISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCV
        MAQGLI   QT TNHSFF  S+KSK         F LP   LR+LPL RCFC +SS+Q+P+DLCNYRE FSKRMDMAGLKPHHRIALGVSGGPDSMALC 
Subjt:  MAQGLI---QTGTNHSFFFLSSKSKIA-----ISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCV

Query:  LTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
        LTA WKMDGL  + K S  +DGLLAIVVDHGLRAESRDEAKVV NRVT LGIRCE+ASCDW +GRPKQGHLQEAARDMRYQMLQKVCVQ  IGVIL
Subjt:  LTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL

A0A6J1F0R0 tRNA(Ile)-2-lysyl-cytidine synthase6.01e-9678.06Show/hide
Query:  MAQGLI---QTGTNHSFFFLSSKSKIA-----ISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCV
        MA+ LI   Q+GT+HSFF LSSKSK +      SF+LP   LR+LPL RCFC YSSLQ+PID+C YRE FSKRMDMAGLKPHHRIALGVSGGPDSMALCV
Subjt:  MAQGLI---QTGTNHSFFFLSSKSKIA-----ISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCV

Query:  LTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
        L AGWKMD L  + KSST +DGLLAIVVDHGLRAESRDEA VV NRVTQ+GIRCE+ASCDW++G+PKQGHLQEAARDMRYQMLQKVCVQH IGVIL
Subjt:  LTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL

A0A6J1I6Q1 tRNA(Ile)-2-lysyl-cytidine synthase1.85e-9477.55Show/hide
Query:  MAQGLI---QTGTNHSFFFLSSKSKIA-----ISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCV
        MAQ LI   Q+GTNHSFF LSSKSK +       F+LP   LR+LPL RCFC YSSLQ+PID+C YRE FSKRMDMAGLKPHHRIALGVSGGPDSMALCV
Subjt:  MAQGLI---QTGTNHSFFFLSSKSKIA-----ISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCV

Query:  LTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
        L AGWK D L  + KSST + GLLAIVVDHGLRAESRDEA VV NRVTQ+GIRCE+ASCDW++G+PKQGHLQEAARDMRYQMLQKVCVQH IGVIL
Subjt:  LTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL

SwissProt top hitse value%identityAlignment
A5ERG8 tRNA(Ile)-lysidine synthase5.7e-1041.9Show/hide
Query:  IALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQ
        + L VSGGPDSMAL  L A W+    G           LLA+ VDHGLR ESR EA +V     QLG+     +  W   +P  G + EAAR  RY++L 
Subjt:  IALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQ

Query:  KVCVQ
        +   Q
Subjt:  KVCVQ

B3CUJ5 tRNA(Ile)-lysidine synthase3.2e-0830.3Show/hide
Query:  IDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCD
        +D C+  E F         + + ++A+ VSGG DS+AL +L   W     G           +  + +DH LR+ES  EA  V + + Q  I+ +  +  
Subjt:  IDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCD

Query:  WINGRPKQGHLQEAARDMRYQMLQKVCVQHNI
        WI+ +   G++Q  AR  RYQ+L   C +H+I
Subjt:  WINGRPKQGHLQEAARDMRYQMLQKVCVQHNI

Q5FQB6 tRNA(Ile)-lysidine synthase7.0e-0834.62Show/hide
Query:  IALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQ
        + L VSGG DSMAL  L   W+ +              ++A VVDH LR ES  EA++  +R+  + ++  L +   +   PK G +QE AR  R++ L+
Subjt:  IALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQ

Query:  KVCV
          CV
Subjt:  KVCV

Q98F87 tRNA(Ile)-lysidine synthase1.2e-0736.84Show/hide
Query:  HRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQM
        H     VSGG DS AL +L      D  G+S K       LLA+ +DHGLR  S  EA+ V     + GI     +  W   +P  G L  AARD RY +
Subjt:  HRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQM

Query:  LQKVCVQHNIGVIL
        L +      IG+I+
Subjt:  LQKVCVQHNIGVIL

Q9XBG6 tRNA(Ile)-lysidine synthase7.5e-1039.45Show/hide
Query:  AGLKPHHRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAAR
        A LK    + L VSGGPDS+AL  L A W+        +S      L  + VDHGLRAE+  EA+ V    T+LG+     +  W   +PK G L  AAR
Subjt:  AGLKPHHRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAAR

Query:  DMRYQMLQK
        + RY++L +
Subjt:  DMRYQMLQK

Arabidopsis top hitse value%identityAlignment
AT3G24560.2 Adenine nucleotide alpha hydrolases-like superfamily protein1.9e-5654.55Show/hide
Query:  MAQG--LIQTGTNHSFFFLSSKSKIAISFILPSFHLRVLPL--------PRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMAL
        MA+G  L   G   S    +S  +++ISF   +      PL         R FC+++ + + +D   Y+E F+KRMDMAGLKPH+RIALGVSGGPDSMAL
Subjt:  MAQG--LIQTGTNHSFFFLSSKSKIAISFILPSFHLRVLPL--------PRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMAL

Query:  CVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL
        CVLTA WK +GL    K+   +DGL+AIVVDHGLR ES+DEA++VC+RV+Q+GIRCE+ASCDW++GRPK GHLQEAAR+MRY+M+  VC +  I V+L
Subjt:  CVLTAGWKMDGLGTSCKSSTLVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCAGGGCCTCATCCAGACGGGAACAAACCACTCATTCTTCTTCTTATCTTCCAAATCCAAAATTGCAATATCCTTCATTCTTCCATCTTTTCATCTTCGTGTTCT
TCCTCTTCCTCGCTGTTTTTGCAGCTATTCTTCTTTGCAACAACCAATCGACCTGTGCAACTACAGGGAAACTTTCTCCAAGCGCATGGATATGGCGGGACTCAAACCCC
ACCACCGTATAGCTCTGGGAGTTAGTGGAGGGCCCGATAGTATGGCTCTTTGTGTTCTTACGGCGGGCTGGAAAATGGATGGCCTGGGTACCTCATGTAAAAGTAGCACT
CTTGTCGATGGTCTCCTGGCAATAGTCGTGGATCATGGGCTTCGTGCTGAGAGCAGAGATGAAGCAAAAGTTGTCTGCAATCGAGTTACTCAATTGGGTATCCGTTGCGA
GCTTGCGTCTTGTGATTGGATAAACGGTAGACCAAAGCAGGGTCACTTGCAAGAAGCAGCTCGTGATATGAGGTACCAAATGTTGCAGAAAGTTTGTGTCCAACACAATA
TTGGAGTGATACTT
mRNA sequenceShow/hide mRNA sequence
ATGGCGCAGGGCCTCATCCAGACGGGAACAAACCACTCATTCTTCTTCTTATCTTCCAAATCCAAAATTGCAATATCCTTCATTCTTCCATCTTTTCATCTTCGTGTTCT
TCCTCTTCCTCGCTGTTTTTGCAGCTATTCTTCTTTGCAACAACCAATCGACCTGTGCAACTACAGGGAAACTTTCTCCAAGCGCATGGATATGGCGGGACTCAAACCCC
ACCACCGTATAGCTCTGGGAGTTAGTGGAGGGCCCGATAGTATGGCTCTTTGTGTTCTTACGGCGGGCTGGAAAATGGATGGCCTGGGTACCTCATGTAAAAGTAGCACT
CTTGTCGATGGTCTCCTGGCAATAGTCGTGGATCATGGGCTTCGTGCTGAGAGCAGAGATGAAGCAAAAGTTGTCTGCAATCGAGTTACTCAATTGGGTATCCGTTGCGA
GCTTGCGTCTTGTGATTGGATAAACGGTAGACCAAAGCAGGGTCACTTGCAAGAAGCAGCTCGTGATATGAGGTACCAAATGTTGCAGAAAGTTTGTGTCCAACACAATA
TTGGAGTGATACTT
Protein sequenceShow/hide protein sequence
MAQGLIQTGTNHSFFFLSSKSKIAISFILPSFHLRVLPLPRCFCSYSSLQQPIDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSST
LVDGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRYQMLQKVCVQHNIGVIL