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Cucsat.G4243 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G4243
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionribonuclease P protein subunit p38
Genome locationctg109:123637..133639
RNA-Seq ExpressionCucsat.G4243
SyntenyCucsat.G4243
Gene Ontology termsGO:0043232 - intracellular non-membrane-bounded organelle (cellular component)
InterPro domainsIPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008466254.1 PREDICTED: uncharacterized protein LOC103503720 isoform X1 [Cucumis melo]7.95e-10283.42Show/hide
Query:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ--
        MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKKQFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQ  
Subjt:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ--

Query:  ---------------AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT
                       AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Subjt:  ---------------AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT

XP_008466263.1 PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo]2.57e-10083.42Show/hide
Query:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ--
        MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKKQFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQ  
Subjt:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ--

Query:  ---------------AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT
                       AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Subjt:  ---------------AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT

XP_008466280.1 PREDICTED: ribonuclease P protein subunit p38 isoform X5 [Cucumis melo]2.38e-10691.76Show/hide
Query:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAI
        MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKKQFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQAI
Subjt:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAI

Query:  LLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT
        LLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Subjt:  LLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT

XP_008466288.1 PREDICTED: ribonuclease P protein subunit p38 isoform X6 [Cucumis melo]7.69e-10591.76Show/hide
Query:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAI
        MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKKQFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQAI
Subjt:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAI

Query:  LLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT
        LLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Subjt:  LLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT

XP_011654557.1 ribonuclease P protein subunit p38 [Cucumis sativus]1.76e-117100Show/hide
Query:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAI
        MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAI
Subjt:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAI

Query:  LLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRTT
        LLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRTT
Subjt:  LLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRTT

TrEMBL top hitse value%identityAlignment
A0A1S3CQU5 uncharacterized protein LOC103503720 isoform X21.24e-10083.42Show/hide
Query:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ--
        MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKKQFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQ  
Subjt:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ--

Query:  ---------------AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT
                       AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Subjt:  ---------------AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT

A0A1S3CQV2 ribonuclease P protein subunit p38 isoform X51.15e-10691.76Show/hide
Query:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAI
        MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKKQFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQAI
Subjt:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAI

Query:  LLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT
        LLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Subjt:  LLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT

A0A1S3CR39 ribonuclease P protein subunit p38 isoform X63.72e-10591.76Show/hide
Query:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAI
        MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKKQFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQAI
Subjt:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAI

Query:  LLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT
        LLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Subjt:  LLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT

A0A1S3CS60 uncharacterized protein LOC103503720 isoform X13.85e-10283.42Show/hide
Query:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ--
        MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKKQFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQ  
Subjt:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ--

Query:  ---------------AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT
                       AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Subjt:  ---------------AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT

A0A1S3CS63 uncharacterized protein LOC103503720 isoform X31.15e-9882.35Show/hide
Query:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ--
        MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLK  FAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQ  
Subjt:  MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ--

Query:  ---------------AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT
                       AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Subjt:  ---------------AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT

SwissProt top hitse value%identityAlignment
P78345 Ribonuclease P protein subunit p381.1e-0431.19Show/hide
Query:  LKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGS
        ++KQ AIGVNEVTR LER                    +L  +L+  +  P  +T+H+  L++SR VP   V     S R+  ++ LK  +A+  K N  
Subjt:  LKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGS

Query:  PINQLIDEI
             +DE+
Subjt:  PINQLIDEI

Q32LC1 Ribonuclease P protein subunit p386.6e-0532.14Show/hide
Query:  LKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGS
        ++KQ AIG+NEVTR LER                    +L   L   +  P  +T+H+  L++SR VP   V     S RL  ++ LK  +A+G K N +
Subjt:  LKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGS

Query:  PINQLIDEILQR
           + +  IL R
Subjt:  PINQLIDEILQR

Q80UU2 Ribonuclease P protein subunit p381.1e-0429.46Show/hide
Query:  LKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGS
        ++KQ  IGVNEVTR LER                    +L  +L+  +  P  +T+H+  L++SR VP   V   + S R+  ++ LK  +A+G + N  
Subjt:  LKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGS

Query:  PINQLIDEILQR
             ++ I+ R
Subjt:  PINQLIDEILQR

Arabidopsis top hitse value%identityAlignment
AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein4.2e-3958.22Show/hide
Query:  YEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAMSRKV
        YEGERL  LL  IQR I+T++  N  SLPEK WLKKQ AIG+NEVTRVLERM P   S +  NP       +LQ ++L A+C PR LT H+P LA SR V
Subjt:  YEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAMSRKV

Query:  PLILVKD-KEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQR
        P++ V+D K  SLRLGELV LKTA+AIGIKA G+ +N L+ +IL R
Subjt:  PLILVKD-KEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGAACCCTAAATCTTCTTCTCATCCTGTTGCACCCCTTCAATCCAAACCTAACCAAGACATTTCCTACGAAGGTGAACGTCTCGATGAGTTGCTACTGTCGAT
TCAGAGAGAGATAAAGACAACAAGAGATTTGAATGCGGAATCCTTGCCGGAAAAATTTTGGCTTAAGAAACAATTTGCAATTGGGGTTAATGAGGTTACTAGAGTTCTTG
AACGGATGACACCATGTGGGGATTCTGCTCGCTTAATGAACCCTAATTATAAGACGTGTACGGTCAAGCTTCAGGCTATACTGTTAACAGCCAATTGCAACCCCCGATGG
CTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGC
AATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGAACCCTAAATCTTCTTCTCATCCTGTTGCACCCCTTCAATCCAAACCTAACCAAGACATTTCCTACGAAGGTGAACGTCTCGATGAGTTGCTACTGTCGAT
TCAGAGAGAGATAAAGACAACAAGAGATTTGAATGCGGAATCCTTGCCGGAAAAATTTTGGCTTAAGAAACAATTTGCAATTGGGGTTAATGAGGTTACTAGAGTTCTTG
AACGGATGACACCATGTGGGGATTCTGCTCGCTTAATGAACCCTAATTATAAGACGTGTACGGTCAAGCTTCAGGCTATACTGTTAACAGCCAATTGCAACCCCCGATGG
CTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGC
AATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACATAA
Protein sequenceShow/hide protein sequence
MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRW
LTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRTT