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Cucsat.G4286 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G4286
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionCBFD_NFYB_HMF domain-containing protein
Genome locationctg1170:847007..853031
RNA-Seq ExpressionCucsat.G4286
SyntenyCucsat.G4286
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064731.1 dr1-associated corepressor [Cucumis melo var. makuwa]5.33e-8194.89Show/hide
Query:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAE AAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
Subjt:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENR RAVVDKVAP GTRRIDDFFRR TKT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

XP_004144200.1 DNA polymerase epsilon subunit C [Cucumis sativus]2.50e-88100Show/hide
Query:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
Subjt:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES
        AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES

XP_008445504.1 PREDICTED: dr1-associated corepressor [Cucumis melo]4.37e-8094.89Show/hide
Query:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAE AAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDA 
Subjt:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENR RAVVDKVAP GTRRIDDFFRR TKT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

XP_022962477.1 DNA polymerase epsilon subunit C [Cucurbita moschata]1.98e-7689.78Show/hide
Query:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+E AAEKKRKTVKLEHIR+AVKRH+SI DFLLDSLPLPSQPSDAP
Subjt:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENRTR VVDKVAPEGTRRIDDFFRR  KT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]1.70e-7791.24Show/hide
Query:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKSAE AAEKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAP
Subjt:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENRTR VVDKVAPEGTRRIDDFFRR  KT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

TrEMBL top hitse value%identityAlignment
A0A0A0KGV1 CBFD_NFYB_HMF domain-containing protein1.21e-88100Show/hide
Query:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
Subjt:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES
        AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES

A0A1S3BDL4 dr1-associated corepressor2.12e-8094.89Show/hide
Query:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAE AAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDA 
Subjt:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENR RAVVDKVAP GTRRIDDFFRR TKT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

A0A5A7VG98 Dr1-associated corepressor2.58e-8194.89Show/hide
Query:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAE AAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
Subjt:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENR RAVVDKVAP GTRRIDDFFRR TKT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

A0A6J1HCT3 DNA polymerase epsilon subunit C9.59e-7789.78Show/hide
Query:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+E AAEKKRKTVKLEHIR+AVKRH+SI DFLLDSLPLPSQPSDAP
Subjt:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENRTR VVDKVAPEGTRRIDDFFRR  KT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

A0A6J1K737 DNA polymerase epsilon subunit C8.24e-7891.24Show/hide
Query:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKSAE AAEKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAP
Subjt:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENRTR VVDKVAPEGTRRIDDFFRR  KT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

SwissProt top hitse value%identityAlignment
B0XTT5 NCT transcriptional regulatory complex subunit A1.1e-0732.76Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDAPAKDENRTR
        ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P QP+     D++ + 
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDAPAKDENRTR

Query:  AVVDKVAPEGTRRIDD
                 G RR  D
Subjt:  AVVDKVAPEGTRRIDD

Q2YDP3 Dr1-associated corepressor1.0e-0536Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLD
        FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +    +  KT+   H++  ++  +   DFL D
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLD

Q4X095 NCT transcriptional regulatory complex subunit A1.1e-0732.76Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDAPAKDENRTR
        ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P QP+     D++ + 
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDAPAKDENRTR

Query:  AVVDKVAPEGTRRIDD
                 G RR  D
Subjt:  AVVDKVAPEGTRRIDD

Q54DA1 Dr1-associated corepressor homolog1.0e-0534.62Show/hide
Query:  RPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLD
        + +FP  R+KKIM+ D+++GK+ S    L+S   ELF+  L  K+ +    KK K + + H++  +K+  S  DFL +
Subjt:  RPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLD

Q9W256 DNA polymerase epsilon subunit 41.2e-0639.13Show/hide
Query:  EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAV
        EA   + P  R++ IMKLD D+   N+EA+F+V+ A ELF+  L+ +S    A+ K+KT++   + MA+
Subjt:  EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAV

Arabidopsis top hitse value%identityAlignment
AT1G07980.1 nuclear factor Y, subunit C108.7e-0831.87Show/hide
Query:  EEEEFG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLP
        EE++ G E  + +FP  R+++IM+ D    ++  +A+FLV+ ATE+F++  +E++ +S+ + K+K +  +H+   V   +   +FL DS+P
Subjt:  EEEEFG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLP

AT3G12480.1 nuclear factor Y, subunit C111.1e-0741.1Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFL
        FP  R+KKIM+ D+D+GK+      LVS + ELFL+ L +++ E   E+  KTV   H++  V+R+ ++ DFL
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFL

AT5G19490.1 Histone superfamily protein7.4e-0732.38Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRT--
        ++  FP  R+KKIM+ D+++GK+      LVS A ELFL+ L   + +    +  KTV   H++  V+   ++ DFL D++        +  +D++ T  
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRT--

Query:  RAVVD
        R VVD
Subjt:  RAVVD

AT5G27910.1 nuclear factor Y, subunit C84.8e-0636.79Show/hide
Query:  EFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVD
        + P  R+KKIMK D D+  + SEA  L+S A E+F+  L  +S   A E KR T++  ++  AV +   I DFLLD      + S A A D      + D
Subjt:  EFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVD

Query:  KVAPEG
           P G
Subjt:  KVAPEG

AT5G43250.1 nuclear factor Y, subunit C139.9e-3663.31Show/hide
Query:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEE   +IRPEFP GRVKKIMKLDKDI K+NSEAL +++ +TELFL  LAEKSA   AEKKRKTV L+H+R+AVKRH+  SDFLLDSLPLP+QP    
Subjt:  MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDK---VAPEGTRRIDDFFRR-STKTKSA
              T++V DK     P GTRRIDDFF +   KT SA
Subjt:  AKDENRTRAVVDK---VAPEGTRRIDDFFRR-STKTKSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCTCTTCCCGCCATTACAAATCCCCAAAATTTCATCGTTCAATCAGAATAATCTGCTCAGATCGAAAGCCATTTCTCAGTCATCGGTTCATTCAGGTTCCGGATATGGA
GGAAGAGGAGTTCGGCGAGGCTATCCGACCGGAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTTGTTTC
TAGTTTCATGCGCCACCGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAATCCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAATGGCC
GTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCACTCGCGCTGTTGTTGA
TAAAGTGGCTCCTGAAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGTCAACTAAGACAAAGTCGGCGGAGACCGAGTCATAG
mRNA sequenceShow/hide mRNA sequence
TCCTCTTCCCGCCATTACAAATCCCCAAAATTTCATCGTTCAATCAGAATAATCTGCTCAGATCGAAAGCCATTTCTCAGTCATCGGTTCATTCAGGTTCCGGATATGGA
GGAAGAGGAGTTCGGCGAGGCTATCCGACCGGAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTTGTTTC
TAGTTTCATGCGCCACCGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAATCCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAATGGCC
GTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCACTCGCGCTGTTGTTGA
TAAAGTGGCTCCTGAAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGTCAACTAAGACAAAGTCGGCGGAGACCGAGTCATAG
Protein sequenceShow/hide protein sequence
SSSRHYKSPKFHRSIRIICSDRKPFLSHRFIQVPDMEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMA
VKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES