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Cucsat.G4397 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G4397
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationctg1173:994825..995353
RNA-Seq ExpressionCucsat.G4397
SyntenyCucsat.G4397
Gene Ontology termsGO:0000723 - telomere maintenance (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0006303 - double-strand break repair via nonhomologous end joining (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0043564 - Ku70:Ku80 complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0042162 - telomeric DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
GO:0003684 - damaged DNA binding (molecular function)
GO:0003678 - DNA helicase activity (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily
IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036685.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.28e-5092.63Show/hide
Query:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        K YLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSE+TLYVKHN T+ILIVSLYVDDLLV G+NAYHIQNFKWEMMKMFEMTDLELMSYFL I
Subjt:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

KAA0041382.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.67e-4590.53Show/hide
Query:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        K YLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSE+TLYVKHN T+ILIVSLYVDDLLV G+NA HIQNFKWEMMKMFEMTDL LMSYFL I
Subjt:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

KAA0054332.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.83e-4789.47Show/hide
Query:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        K YLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSE+TLYVKHN T ILIVSLYVDDLLV G+NA HIQNFKWEMMKMFEM DL LMSYFL I
Subjt:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

KAA0068196.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.91e-4790.53Show/hide
Query:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        K YLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSE+TLYVKHN T+ILIVSLYVDDLLV G+NA HIQNFKWEMMKMFEMTDL LMSYFL I
Subjt:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

TYK08583.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.60e-5192.63Show/hide
Query:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        K YLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSE+TLYVKHN T+ILIVSLYVDDLLV G+NAYHIQNFKWEMMKMFEMTDLELMSYFL I
Subjt:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

TrEMBL top hitse value%identityAlignment
A0A5A7T5F0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.59e-5092.63Show/hide
Query:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        K YLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSE+TLYVKHN T+ILIVSLYVDDLLV G+NAYHIQNFKWEMMKMFEMTDLELMSYFL I
Subjt:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

A0A5A7TD67 Retrovirus-related Pol polyprotein from transposon TNT 1-948.07e-4690.53Show/hide
Query:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        K YLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSE+TLYVKHN T+ILIVSLYVDDLLV G+NA HIQNFKWEMMKMFEMTDL LMSYFL I
Subjt:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

A0A5A7UEV5 Retrovirus-related Pol polyprotein from transposon TNT 1-944.27e-4789.47Show/hide
Query:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        K YLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSE+TLYVKHN T ILIVSLYVDDLLV G+NA HIQNFKWEMMKMFEM DL LMSYFL I
Subjt:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

A0A5A7VNN1 Retrovirus-related Pol polyprotein from transposon TNT 1-949.27e-4890.53Show/hide
Query:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        K YLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSE+TLYVKHN T+ILIVSLYVDDLLV G+NA HIQNFKWEMMKMFEMTDL LMSYFL I
Subjt:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

A0A5D3C9M1 Retrovirus-related Pol polyprotein from transposon TNT 1-942.23e-5192.63Show/hide
Query:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        K YLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSE+TLYVKHN T+ILIVSLYVDDLLV G+NAYHIQNFKWEMMKMFEMTDLELMSYFL I
Subjt:  KFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

SwissProt top hitse value%identityAlignment
P04146 Copia protein8.9e-0936.56Show/hide
Query:  LKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYV--KHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        L KA+YGLKQA R W+   ++ L    F+ S  +  +Y+  K N    + V LYVDD+++   +   + NFK  +M+ F MTDL  + +F+ I
Subjt:  LKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYV--KHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-1143.37Show/hide
Query:  LKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKH-NSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDL
        L K+LYGLKQAPR WY K D  + S  +LK+ S+  +Y K  +    +I+ LYVDD+L++G +   I   K ++ K F+M DL
Subjt:  LKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKH-NSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDL

P25600 Putative transposon Ty5-1 protein YCL074W2.2e-0735.63Show/hide
Query:  LYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        +YGLKQAP  W   I+  L  +GF +   E  LY +  S   + +++YVDDLLV   +       K E+ K++ M DL  +  FL +
Subjt:  LYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.4e-1442.86Show/hide
Query:  LKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        L+KALYGLKQAPRAWY ++  +LL++GF+ S+S+T+L+V     +I+ + +YVDD+L+ G++   + N    + + F + D E + YFL I
Subjt:  LKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.5e-1339.56Show/hide
Query:  LKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        L+KA+YGLKQAPRAWY ++  +LL++GF+ S+S+T+L+V     +I+ + +YVDD+L+ G++   +++    + + F + + E + YFL I
Subjt:  LKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.4e-1237.36Show/hide
Query:  LKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI
        LKK++YGLKQA R W+ K    L+  GF++S S+ T ++K  +T  L V +YVDD+++  +N   +   K ++   F++ DL  + YFL +
Subjt:  LKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLELMSYFLSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTAACAAGCACAAAGCCAGGCTTGTGGTTAGAGGCCTGAAGGATGTGAGAAGCAAGATGAAGGAAATAAAGTTTTATCTTCTCAAGAAGGCTCTTTATGGTCTAAAACA
AGCTCCAAGAGCTTGGTATAGCAAAATTGATGAACATTTACTGAGTTTGGGATTTTTGAAAAGTTTATCAGAAACAACCTTATATGTCAAGCACAATAGTACTGCCATTC
TTATTGTTTCACTGTATGTTGATGATCTACTGGTTATAGGACACAATGCATATCATATTCAAAATTTCAAATGGGAGATGATGAAGATGTTTGAAATGACAGATCTCGAG
CTCATGTCCTACTTCCTTAGCATA
mRNA sequenceShow/hide mRNA sequence
ATTAACAAGCACAAAGCCAGGCTTGTGGTTAGAGGCCTGAAGGATGTGAGAAGCAAGATGAAGGAAATAAAGTTTTATCTTCTCAAGAAGGCTCTTTATGGTCTAAAACA
AGCTCCAAGAGCTTGGTATAGCAAAATTGATGAACATTTACTGAGTTTGGGATTTTTGAAAAGTTTATCAGAAACAACCTTATATGTCAAGCACAATAGTACTGCCATTC
TTATTGTTTCACTGTATGTTGATGATCTACTGGTTATAGGACACAATGCATATCATATTCAAAATTTCAAATGGGAGATGATGAAGATGTTTGAAATGACAGATCTCGAG
CTCATGTCCTACTTCCTTAGCATA
Protein sequenceShow/hide protein sequence
INKHKARLVVRGLKDVRSKMKEIKFYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSETTLYVKHNSTAILIVSLYVDDLLVIGHNAYHIQNFKWEMMKMFEMTDLE
LMSYFLSI