; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G4617 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G4617
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionTranscription initiation factor IIF subunit beta
Genome locationctg1227:725143..728491
RNA-Seq ExpressionCucsat.G4617
SyntenyCucsat.G4617
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006413 - translational initiation (biological process)
GO:0005674 - transcription factor TFIIF complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR003196 - Transcription initiation factor IIF, beta subunit
IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040450 - TFIIF beta subunit, HTH domain
IPR040504 - TFIIF, beta subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152667.1 transcription initiation factor IIF subunit beta [Cucumis sativus]2.04e-185100Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_008444765.1 PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo]3.38e-18499.23Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED+HGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_022144312.1 transcription initiation factor IIF subunit beta [Momordica charantia]3.49e-18297.69Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD+LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPH ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_023002475.1 transcription initiation factor IIF subunit beta [Cucurbita maxima]4.08e-17896.54Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDE+G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_038884084.1 transcription initiation factor IIF subunit beta-like [Benincasa hispida]7.36e-18198.46Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDE+G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

TrEMBL top hitse value%identityAlignment
A0A0A0LRL0 Transcription initiation factor IIF subunit beta9.86e-186100Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A1S3BBV5 Transcription initiation factor IIF subunit beta1.63e-18499.23Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED+HGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A5A7VAJ9 Transcription initiation factor IIF subunit beta1.63e-18499.23Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED+HGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A6J1CTB7 Transcription initiation factor IIF subunit beta1.69e-18297.69Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD+LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPH ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A6J1KP21 Transcription initiation factor IIF subunit beta1.98e-17896.54Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDE+G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

SwissProt top hitse value%identityAlignment
O94424 Transcription initiation factor IIF subunit beta7.7e-2131.15Show/hide
Query:  EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFV-PMCVFSE-
        E++      + +LD G+    VWL+K P  +   W + P  D+  L  V +  D +Q    +S          E  +VPK ++L +   FV    VF E 
Subjt:  EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFV-PMCVFSE-

Query:  ---ASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLIS-STSKEKKKVAPVKQSDVKRTRRDRGELE
           +S    ++ G V H+ ++ P     + Y ++ ++R   +    R++Q+ID DRG  +   PG +G  S ST+   + V P     +K +R  R EL 
Subjt:  ---ASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLIS-STSKEKKKVAPVKQSDVKRTRRDRGELE

Query:  DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE
        DI+FK FE    W LK L +   QP  +LKE+L+ + + NKRG     Y LKPEYK +++
Subjt:  DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE

P41900 General transcription factor IIF subunit 23.3e-1626.28Show/hide
Query:  EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPS-----------------DSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFS
        ED+  +     +LD   A R VWL+K P  +A+ W+  P +                  SL L   +L+LDP +   +  +         +   V K  +
Subjt:  EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPS-----------------DSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFS

Query:  LNMFKDFVP-------MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVA
        L +F    P           ++    K+ MEG++  K + +P ++N   Y KL  E   K+    R++Q ID    +     P      +   +E+KK  
Subjt:  LNMFKDFVP-------MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVA

Query:  PVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
            ++ K+ R D+  + D++F  FE+   + +K LV+ T+QP  +LKEIL ++C YN +  ++  +ELK EY+
Subjt:  PVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q01750 General transcription factor IIF subunit 26.7e-1729.15Show/hide
Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK
        +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A   + G  P S S      FV        + VF+E+S  K
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK

Query:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER
        +S+EG V  + + +P +   E Y KL R +  +S    R  Q  D     + +P+      I    K+K+        D KR R D+  + D++F  FE+
Subjt:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER

Query:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
           + LK LV  T QP  +LKEIL E+ + N +G ++ T+ELKPEY+
Subjt:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q2T9L9 General transcription factor IIF subunit 26.7e-1728.74Show/hide
Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK
        +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A   + G  P S S      FV        + VF+E+S  K
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK

Query:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER
        +S+EG V  + + +P +   E Y +L R +  +S    R  Q +D     + +P+      I    K+K+        D KR R D+  + D++F  FE+
Subjt:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER

Query:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
           + LK LV  T QP  +LK+IL E+ V N +G ++ T+ELKPEY+
Subjt:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q54KT7 General transcription factor IIF subunit 23.3e-1628.57Show/hide
Query:  LDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEH
        ++T  AD  VWL+K P  +++SWQ         + +  +    ++  ++ SL +     G + G   +  +     D  P+ +FSE   G +++EG +  
Subjt:  LDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEH

Query:  KFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISST--SKEKKKVAPV-----KQSDVKRTRRDRGELEDIMFKLFERQP
        + D+K   E+   Y  L + R  K   K R  QVID               L + T     K KV+ V     K+S  K+ +    E+ D++F  F  + 
Subjt:  KFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISST--SKEKKKVAPV-----KQSDVKRTRRDRGELEDIMFKLFERQP

Query:  NWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
        +  LK L   T+QP   LK IL ++C+ NKRG     YELKPE++
Subjt:  NWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Arabidopsis top hitse value%identityAlignment
AT1G75510.1 Transcription initiation factor IIF, beta subunit1.4e-9767.78Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSW--------QAHPPSDSLP-LAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDF
        MED H       NLD  K+DRS+WLMKCP++V K+W         +   SDS P +AK++  +DPL+ D  S  +FKM M G E GN+PK ++LNMF DF
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSW--------QAHPPSDSLP-LAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDF

Query:  VPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDR
        VPM  FS+ +QG  + EGKV+HKFDMKP+ E +E Y +LCRERT+K+MVKNRQIQVIDNDRGVHMRPMPGM+GL+SS SKEK+K  PVKQ++VKRTRRDR
Subjt:  VPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDR

Query:  GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE-DTGGE
        GELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNELCVYNKRG+NQGTYELKPEYKKS E DTGG+
Subjt:  GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE-DTGGE

AT3G52270.1 Transcription initiation factor IIF, beta subunit3.7e-7958.57Show/hide
Query:  LDTGKADRSVWLMKCPLLVAKSWQAH--------PPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKV
        L+TG A+RS+ LMK P LVA S Q+H        P     P AKVIL +DPL + E    QF ME+A  ++GN+P+ ++L+M KDF+PM VF E+S GK+
Subjt:  LDTGKADRSVWLMKCPLLVAKSWQAH--------PPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKV

Query:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQ
        S+EGK+++KFDM+PH+EN+E YG+LCRERTNK M KNRQIQVIDN RG+HMRPMPGM+  I + + EKKK+   + S++KRTRRDR E+E++MF LFERQ
Subjt:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQ

Query:  PNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED
         NW L+ L+QETDQP QFLK++L +LC+YN +G+NQGTYELKPEYKK+ ++
Subjt:  PNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATGAGCACGGCAGCGGCGGTAGTAGCAGTAACTTGGATACAGGCAAGGCGGATAGATCAGTGTGGCTAATGAAGTGTCCGTTGCTAGTCGCTAAGTCGTGGCA
GGCTCATCCTCCATCTGATTCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAA
CTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGCAAGGTGTCAATGGAAGGGAAA
GTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTTGAAATGTACGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGT
GATAGACAATGACCGCGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACG
TGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAACCAAATTGGGCCCTAAAGCAACTAGTCCAAGAAACTGATCAACCT
GCTCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAGGACAC
CGGTGGAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATGAGCACGGCAGCGGCGGTAGTAGCAGTAACTTGGATACAGGCAAGGCGGATAGATCAGTGTGGCTAATGAAGTGTCCGTTGCTAGTCGCTAAGTCGTGGCA
GGCTCATCCTCCATCTGATTCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAA
CTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGCAAGGTGTCAATGGAAGGGAAA
GTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTTGAAATGTACGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGT
GATAGACAATGACCGCGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACG
TGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAACCAAATTGGGCCCTAAAGCAACTAGTCCAAGAAACTGATCAACCT
GCTCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAGGACAC
CGGTGGAGAGTAG
Protein sequenceShow/hide protein sequence
MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGK
VEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP
AQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE