CuGenDBv2

Gene ID	Cucsat.G4661
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	double-stranded RNA-binding protein 1-like
Genome location	ctg1227:1437034..1439983
RNA-Seq Expression	Cucsat.G4661
Synteny	Cucsat.G4661
Gene Ontology terms	GO:0009733 - response to auxin (biological process) GO:0009735 - response to cytokinin (biological process) GO:0009737 - response to abscisic acid (biological process) GO:0010267 - production of ta-siRNAs involved in RNA interference (biological process) GO:0010305 - leaf vascular tissue pattern formation (biological process) GO:0010589 - leaf proximal/distal pattern formation (biological process) GO:0016075 - rRNA catabolic process (biological process) GO:0031054 - pre-miRNA processing (biological process) GO:0035279 - mRNA cleavage involved in gene silencing by miRNA (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0010445 - nuclear dicing body (cellular component) GO:0042802 - identical protein binding (molecular function) GO:0035198 - miRNA binding (molecular function) GO:0004525 - ribonuclease III activity (molecular function) GO:0003725 - double-stranded RNA binding (molecular function)
InterPro domains	IPR044451 - AtDRB-like, second double-stranded RNA binding domain, plant IPR044450 - AtDRB-like, first double-stranded RNA binding domain, plant IPR031147 - Double-stranded RNA-binding protein IPR014720 - Double-stranded RNA-binding domain IPR011907 - Ribonuclease III

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0065099.1 double-stranded RNA-binding protein 1 isoform X1 [Cucumis melo var. makuwa]

1.30e-207

91.59

Show/hide

Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
        LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLS KSVNQVQLTVIPSCKRKEAADCSV PKSTA+PRAKKGRFKR
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR

Query:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN
           GVLR R F NGLVNLDF+N DRS LEPFTT  VQLPGY GPVDLAKDTL NSE RTTDLSS+NND LVSNVQSDMP  +N N GN CSGT NSNQVN
Subjt:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN

Query:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ
        CATSNVMS PLTDVQPTCSEV NVAAGVTGELQ
Subjt:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ

XP_008444916.1 PREDICTED: double-stranded RNA-binding protein 1 isoform X1 [Cucumis melo]

1.97e-204

90.69

Show/hide

Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRY+SLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
        LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLS KS+N +QLTVIPSCKRKEAADCSV PKSTA+PRAKKGRFKR
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR

Query:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN
           GV R R F NGLVNLDF+N DRS LEPFTT  VQLPGY GPVDLAKDTL NSE RTTDLSS+NNDVLVSNVQSDMP  +N N GNGCSGT NSNQVN
Subjt:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN

Query:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ
        CATSNVMS PLTDVQPTCSEV NVAAGVTGELQ
Subjt:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ

XP_008444917.1 PREDICTED: double-stranded RNA-binding protein 1 isoform X2 [Cucumis melo]

1.58e-204

90.69

Show/hide

Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRY+SLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
        LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLS KS+N +QLTVIPSCKRKEAADCSV PKSTA+PRAKKGRFKR
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR

Query:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN
           GV R R F NGLVNLDF+N DRS LEPFTT  VQLPGY GPVDLAKDTL NSE RTTDLSS+NNDVLVSNVQSDMP  +N N GNGCSGT NSNQVN
Subjt:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN

Query:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ
        CATSNVMS PLTDVQPTCSEV NVAAGVTGELQ
Subjt:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ

XP_011649689.1 double-stranded RNA-binding protein 1 isoform X1 [Cucumis sativus]

6.56e-234

100

Show/hide

Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
        LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR

Query:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN
        FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN
Subjt:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN

Query:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ
        CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ
Subjt:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ

XP_011649690.1 double-stranded RNA-binding protein 1 isoform X2 [Cucumis sativus]

2.26e-197

100

Show/hide

Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
        LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR

Query:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLN
        FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLN
Subjt:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRU8 Uncharacterized protein

3.18e-234

100

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Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
        LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR

Query:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN
        FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN
Subjt:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN

Query:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ
        CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ
Subjt:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ

A0A1S3BBH0 double-stranded RNA-binding protein 1 isoform X1

9.55e-205

90.69

Show/hide

Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRY+SLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
        LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLS KS+N +QLTVIPSCKRKEAADCSV PKSTA+PRAKKGRFKR
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR

Query:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN
           GV R R F NGLVNLDF+N DRS LEPFTT  VQLPGY GPVDLAKDTL NSE RTTDLSS+NNDVLVSNVQSDMP  +N N GNGCSGT NSNQVN
Subjt:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN

Query:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ
        CATSNVMS PLTDVQPTCSEV NVAAGVTGELQ
Subjt:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ

A0A1S3BBH3 double-stranded RNA-binding protein 1 isoform X2

7.65e-205

90.69

Show/hide

Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRY+SLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
        LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLS KS+N +QLTVIPSCKRKEAADCSV PKSTA+PRAKKGRFKR
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR

Query:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN
           GV R R F NGLVNLDF+N DRS LEPFTT  VQLPGY GPVDLAKDTL NSE RTTDLSS+NNDVLVSNVQSDMP  +N N GNGCSGT NSNQVN
Subjt:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN

Query:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ
        CATSNVMS PLTDVQPTCSEV NVAAGVTGELQ
Subjt:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ

A0A5A7VI00 Double-stranded RNA-binding protein 1 isoform X1

6.30e-208

91.59

Show/hide

Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
        LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLS KSVNQVQLTVIPSCKRKEAADCSV PKSTA+PRAKKGRFKR
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR

Query:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN
           GVLR R F NGLVNLDF+N DRS LEPFTT  VQLPGY GPVDLAKDTL NSE RTTDLSS+NND LVSNVQSDMP  +N N GN CSGT NSNQVN
Subjt:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVN

Query:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ
        CATSNVMS PLTDVQPTCSEV NVAAGVTGELQ
Subjt:  CATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ

A0A6J1K8Y3 double-stranded RNA-binding protein 1-like

3.18e-168

78.38

Show/hide

Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQKVGLPTPVYETIKEGPSHEPTF+STVIV DVRYDSLPGFSNRKAAEQSAAEVALMELSKS+DLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR
        LYQC+KDD  GR SLFSCTVEIGGIRYIGA AKTKKEAEIKAARTALLAIQSCP SL E SVNQVQLTVIP CKRKEAAD SVKPK+T +PR KKGRFK+
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKR

Query:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPF-TTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQV
            V + +D  +GL NL+F+    S+ EP  TTGV  +PG    V+LAKDT+LNSE +TTDLSS+ NDVLVSN+QSD P L NGN GN    TF+SNQ+
Subjt:  FKRGVLRNRDFINGLVNLDFDNTDRSTLEPF-TTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQV

Query:  NCATSNVMSSPLTDVQPTCSEVANVAAGVTGEL
        NC+TS+VMS PL+DVQ TC EVANVA G+TGEL
Subjt:  NCATSNVMSSPLTDVQPTCSEVANVAAGVTGEL

SwissProt top hits

e value

%identity

Alignment

O04492 Double-stranded RNA-binding protein 1

4.0e-61

61.75

Show/hide

Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQK  LPTPVYE +KEGPSH+  F STVI++ VRY+SLPGF NRKAAEQSAAEVAL EL+KSS+L+  VSQPVHETGLCKNLLQEYAQKMN+AIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQS-CPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFK
        LYQCQK +  GR + F+CTVEIGGI+Y GA  +TKK+AEI A RTALLAIQS   N+L+  +    QLTV+P C++K         ++  + +A+K +FK
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQS-CPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFK

Query:  ----RFKRGVLRNRDFI
            + KR V +N + I
Subjt:  ----RFKRGVLRNRDFI

Q0DJA3 Double-stranded RNA-binding protein 3

4.0e-53

61.58

Show/hide

Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQK GL TP Y T KEGPSHEP F STV++N+  Y SLPGFSNRKAAEQSAAEVALME+ KS   N ++   V ETGLCKNLLQEYAQKMN+AIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRG-SLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVN-QVQLTVIPSCKRKEAADCSVKPKSTASP-RAKKGR
         Y C K   P  G + F CTVEIGGI+YIGA A+TKK+AEIKAARTALLAIQ      SE S N   +  V+P   ++   +   +P  T  P +AKKG 
Subjt:  LYQCQKDDGPGRG-SLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVN-QVQLTVIPSCKRKEAADCSVKPKSTASP-RAKKGR

Query:  FKR
        FK+
Subjt:  FKR

Q0DKP4 Double-stranded RNA-binding protein 2

1.3e-22

40.26

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Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        +LQE AQ+     P Y  I+EGP H P F +TV  N   ++S    S  + AE +AAEVAL ELSK    +   ++ + ETG+ KNLLQE A +    +P
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP
        +Y   +  GPG   +F+CTVE+ G+ + G   KTKK+A+  AA  A   ++  P
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP

Q0IQN6 Double-stranded RNA-binding protein 8

2.6e-52

60.4

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Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQK GL TP Y T KEGPSHEP F STV++N+  YDSLPGF NRKAAEQSAAEVALME+ KS   N ++   V ETGLCKNLLQEYAQKMN+AIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVN-QVQLTVIPSCKRKEAADCSVKPKSTASP-RAKKGRF
         Y C K       + F CTVEIGGI+YIGA A+TKK+AEIKAARTALLAIQ      SE S N   +  V+P   ++   +   +P  T  P + KKG F
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVN-QVQLTVIPSCKRKEAADCSVKPKSTASP-RAKKGRF

Query:  KR
        K+
Subjt:  KR

Q0IV63 Double-stranded RNA-binding protein 7

7.6e-52

60.4

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Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQK GL TP Y T KEGPSHEP F STV++N+  YDSLPGF NRKAAEQSAAEVALME+ KS   N ++   V ETGLCKNLLQEYAQKMN+AIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVN-QVQLTVIPSCKRKEAADCSVKPKSTASP-RAKKGRF
         Y C K       + F CTVEIGGI+YIGA A+TKK+AEIKAARTALLAIQ      SE S N   +  V+P   ++   +    P  T  P + KKG F
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVN-QVQLTVIPSCKRKEAADCSVKPKSTASP-RAKKGRF

Query:  KR
        K+
Subjt:  KR

Arabidopsis top hits

e value

%identity

Alignment

AT1G09700.1 dsRNA-binding domain-like superfamily protein

2.9e-62

61.75

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Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        RLQEYAQK  LPTPVYE +KEGPSH+  F STVI++ VRY+SLPGF NRKAAEQSAAEVAL EL+KSS+L+  VSQPVHETGLCKNLLQEYAQKMN+AIP
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQS-CPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFK
        LYQCQK +  GR + F+CTVEIGGI+Y GA  +TKK+AEI A RTALLAIQS   N+L+  +    QLTV+P C++K         ++  + +A+K +FK
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQS-CPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFK

Query:  ----RFKRGVLRNRDFI
            + KR V +N + I
Subjt:  ----RFKRGVLRNRDFI

AT2G28380.1 dsRNA-binding protein 2

2.7e-20

39.24

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Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        +LQE AQ+     P Y  I+EGP H P F +TV  N   ++S    S  + AE SAAEVAL  LS     +   ++ + ETG+ KNLLQE AQ++   +P
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLS
         Y   +  G G   +F+ TVE+ GI + G  AK KK+AE  AA  A  +++      S
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLS

AT3G26932.1 dsRNA-binding protein 3

1.3e-22

40.26

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Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        +LQE AQ+     P Y   +EGP H P F ++V  N   ++S    S  + AE SAAEVAL  LS         ++ + ETG+ KNLLQE A +    +P
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP
        +Y   +  GPG    FSCTVE+ G+ + G  AKTKK+AE  AA  A  +++  P
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP

AT3G26932.2 dsRNA-binding protein 3

1.3e-22

40.26

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Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        +LQE AQ+     P Y   +EGP H P F ++V  N   ++S    S  + AE SAAEVAL  LS         ++ + ETG+ KNLLQE A +    +P
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP
        +Y   +  GPG    FSCTVE+ G+ + G  AKTKK+AE  AA  A  +++  P
Subjt:  LYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP

AT5G41070.1 dsRNA-binding protein 5

1.5e-18

32.33

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Query:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP
        +LQE AQ+     P Y  I+EGP H P F ++V  N   ++S    S  + AE +AAEV+L  LS         ++ + ETG+ KNLLQE A +    +P
Subjt:  RLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIP

Query:  LYQCQKDDG---PGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQ--SCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKK
        +Y   +      PG    FSCTVE+ G+ + G  AKTKK+AE  AA  A  +++  S  +S  E+   +    V+   K KE      + ++T   R + 
Subjt:  LYQCQKDDG---PGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQ--SCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKK

Query:  GRFKRFKRGVLRNRDFINGLVNLDFDNTDRST
         +    K  ++    +IN L N    ++  ST
Subjt:  GRFKRFKRGVLRNRDFINGLVNLDFDNTDRST

Sequences

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CDS sequence

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TTTTGGCAATTAGCCCTAGGGCACCATCACCTAGGCTTCGAACTTTGCAGTTCATTTTTTTCGCGTCTACGAACGAAGTGGTTAGCCCAGCTGCACTGCTTCCTCTCTGC
TCTTCGCCTTTACCAATACTCAAATCTCCTGCTGAGAGAGGATTCTCACCTTTTTCTTACTCCTCAAAGCCATGCCAGCCAAGGACAACTTTCAGGTCGACTGCAGGAAT
ATGCACAAAAAGTGGGACTTCCCACACCTGTATACGAGACTATCAAAGAAGGTCCTTCCCATGAGCCAACTTTTCATTCTACGGTGATTGTTAATGATGTTAGATATGAT
TCTCTACCGGGATTTTCTAATCGCAAGGCAGCAGAGCAGTCAGCTGCTGAAGTAGCTCTTATGGAACTGTCTAAATCCAGTGATCTTAATCCACATGTCTCTCAACCCGT
GCACGAAACAGGACTGTGCAAAAATCTGCTTCAGGAGTATGCACAGAAGATGAACTTTGCAATCCCACTTTATCAATGCCAAAAAGATGATGGTCCAGGCAGAGGATCCC
TTTTCTCATGTACAGTAGAAATTGGAGGGATCCGCTATATTGGTGCTGTAGCAAAAACAAAGAAAGAAGCAGAAATTAAAGCTGCAAGAACTGCTTTGTTAGCAATCCAA
TCTTGCCCGAATTCATTGTCTGAAAAATCTGTCAATCAAGTTCAGCTCACTGTGATCCCATCATGCAAGCGAAAAGAAGCAGCAGATTGCTCAGTTAAACCAAAGTCCAC
TGCATCGCCCAGAGCAAAGAAAGGTCGATTTAAGAGATTTAAGAGAGGAGTGTTAAGGAATAGAGACTTCATAAATGGATTAGTCAATTTGGACTTTGACAACACTGATA
GATCAACCTTGGAACCTTTTACAACTGGGGTTGTCCAGTTGCCAGGGTATGTGGGACCAGTTGATTTAGCGAAAGATACTTTGCTGAATTCCGAGTGTAGAACGACTGAT
CTAAGCTCAAATAACAACGACGTTTTGGTCTCCAACGTCCAAAGCGACATGCCTCTGCTCCTAAATGGTAATTCCGGAAATGGTTGTTCGGGTACTTTCAATTCCAATCA
AGTAAACTGTGCAACTTCTAATGTTATGAGTTCTCCTCTGACTGACGTTCAACCAACTTGTAGTGAAGTAGCGAATGTGGCTGCTGGAGTAACAGGAGAGCTTCAGTGA

mRNA sequence

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Protein sequence

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FWQLALGHHHLGFELCSSFFSRLRTKWLAQLHCFLSALRLYQYSNLLLREDSHLFLTPQSHASQGQLSGRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYD
SLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQ
SCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKRFKRGVLRNRDFINGLVNLDFDNTDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTD
LSSNNNDVLVSNVQSDMPLLLNGNSGNGCSGTFNSNQVNCATSNVMSSPLTDVQPTCSEVANVAAGVTGELQ

Cucsat.G4661 (gene) of Cucumber (B10) v3 genome