CuGenDBv2

Gene ID	Cucsat.G4747
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	40S ribosomal protein S11
Genome location	ctg1227:2888953..2891020
RNA-Seq Expression	Cucsat.G4747
Synteny	Cucsat.G4747
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000266 - Ribosomal protein S17/S11 IPR012340 - Nucleic acid-binding, OB-fold IPR032440 - 40S ribosomal protein S11, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004138716.1 40S ribosomal protein S11 [Cucumis sativus]

7.24e-90

100

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

XP_008445242.1 PREDICTED: 40S ribosomal protein S11 [Cucumis melo]

7.24e-90

100

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

XP_022132263.1 40S ribosomal protein S11 [Momordica charantia]

2.95e-89

99.23

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

XP_022996631.1 40S ribosomal protein S11-like [Cucurbita maxima]

9.80e-89

98.46

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKS+GLGFKTPR+AIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

XP_038884265.1 40S ribosomal protein S11 [Benincasa hispida]

7.24e-90

100

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPP1 Ribosomal_S17_N domain-containing protein

3.50e-90

100

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

A0A1S3BCY7 40S ribosomal protein S11

3.50e-90

100

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

A0A6J1BVS5 40S ribosomal protein S11

1.43e-89

99.23

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

A0A6J1HEQ3 40S ribosomal protein S11

1.43e-89

99.23

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

A0A6J1KTV2 40S ribosomal protein S11

1.43e-89

99.23

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

SwissProt top hits

e value

%identity

Alignment

P16181 40S ribosomal protein S11-1

2.0e-67

91.54

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWK+IGLGFKTPR+AI+G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAH++PCFRVKEGDH+IIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

P17093 40S ribosomal protein S11

4.5e-67

93.08

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLS+KK+GKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCPFTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAHI+P FRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

P25460 40S ribosomal protein S11

6.3e-69

95.38

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGK+PGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCPFTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAHI+PCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

P42733 40S ribosomal protein S11-3

1.0e-66

92.31

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSK SGKGKRPGKGGNRFWK+IGLGFKTPR+AI+G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAH++PCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

Q9M5M1 40S ribosomal protein S11

3.1e-68

93.08

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFL+SKK+GKGKRPGKGGNRFWKSIGLGFKTPR+AI+GTYIDKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAH++PCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

Arabidopsis top hits

e value

%identity

Alignment

AT3G48930.1 Nucleic acid-binding, OB-fold-like protein

1.4e-68

91.54

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWK+IGLGFKTPR+AI+G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAH++PCFRVKEGDH+IIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein

6.0e-67

90.77

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWK+IGLGFKTPR+AIEGTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+R
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAH++PCFRVKEGD V IGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

AT5G23740.1 ribosomal protein S11-beta

7.1e-68

92.31

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Query:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR
        MAEQTEKAFLKQPKVFLSSK SGKGKRPGKGGNRFWK+IGLGFKTPR+AI+G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQR
Subjt:  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQR

Query:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR
        YEKRHSNIPAH++PCFRVKEGDHVIIGQCR
Subjt:  YEKRHSNIPAHIAPCFRVKEGDHVIIGQCR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGGAACAGACGGAGAAGGCTTTTCTGAAGCAGCCCAAGGTGTTCCTTAGCTCGAAGAAATCGGGCAAAGGAAAGAGGCCAGGAAAAGGAGGTAATCGTTTCTGGAA
GAGCATTGGTTTGGGCTTCAAGACTCCCAGAGATGCAATTGAAGGAACCTACATTGATAAGAAGTGTCCATTCACTGGCACTGTTTCTATCAGGGGGCGTATACTTGCTG
GTACCTGCCACAGTGCTAAGATGGTCAGAACTATCATTGTTAGACGTAATTATCTTCACTATGTGAAGAAATATCAAAGGTATGAAAAGAGACACTCTAACATCCCAGCA
CACATAGCTCCTTGCTTTAGGGTTAAAGAGGGAGACCATGTCATCATTGGCCAGTGCAGGTTTATACATGAACTTCCTATATACCTCTGGTTCTTATATACTCTTGCACT
TTTATTTATAGTCATTTTCTTAATGCCATTCTTTGCAGGCCCTTGTCAAAGACCGTGA

mRNA sequence

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Protein sequence

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MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPA
HIAPCFRVKEGDHVIIGQCRFIHELPIYLWFLYTLALLFIVIFLMPFFAGPCQRP

Cucsat.G4747 (gene) of Cucumber (B10) v3 genome