CuGenDBv2

Gene ID	Cucsat.G4801
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Mitochondrial transcription termination factor family protein isoform 2
Genome location	ctg1227:3851825..3866660
RNA-Seq Expression	Cucsat.G4801
Synteny	Cucsat.G4801
Gene Ontology terms	GO:0006353 - DNA-templated transcription, termination (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0042646 - plastid nucleoid (cellular component) GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004138649.1 uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus]

1.70e-156

99.54

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQN YPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
Subjt:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

XP_008441218.1 PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo]

3.15e-152

97.22

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQN YPRKWE+CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDR+KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
Subjt:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

XP_011649898.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus]

4.83e-159

99.54

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Query:  MNGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSV
        MNGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQN YPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSV
Subjt:  MNGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSV

Query:  EEQDKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGY
        EEQDKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGY
Subjt:  EEQDKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGY

Query:  YVDCKGDCIAKCTRCWVRF
        YVDCKGDCIAKCTRCWVRF
Subjt:  YVDCKGDCIAKCTRCWVRF

XP_023549996.1 uncharacterized protein LOC111808316 [Cucurbita pepo subsp. pepo]

5.69e-130

85.19

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSL SPIST+DS TR C ST CT TA S+AVCS+VSFS   AK+ I  VRRQ+ YPRKWEI S+ QVESL+LSDEDKKTWEACRQALS FSFS EEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDR+K+VPNI+ VN+ILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLL+KEWGIQGKSLRNLLLRNPKVLGY VD
Subjt:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

XP_038885056.1 uncharacterized protein LOC120075592 [Benincasa hispida]

9.59e-138

90.28

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSL SPISTIDSATRFCCSTR  ATAISDA  S+VSFS H AKH IK VRRQ  YP KWEICS+TQVESL LSDED+KTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAF HIHSPYWGEDR+K+VPNIE VNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGY VD
Subjt:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQN8 Uncharacterized protein

8.21e-157

99.54

Show/hide

Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQN YPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
Subjt:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

A0A1S3B2X0 uncharacterized protein LOC103485418

1.53e-152

97.22

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQN YPRKWE+CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDR+KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
Subjt:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

A0A5A7T0X2 Mitochondrial transcription termination factor family protein isoform 2

3.33e-130

96.89

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQN YPRKWE+CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDR+KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPK

A0A6J1FK31 uncharacterized protein LOC111444935

9.20e-129

84.26

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSL SPIST+DS TR C ST C  TA S+AVCS+VSFS   AK+ I  VRRQ+ YPRKWEI S+ QVESL+LSDEDKKTWEACRQALS+FSFS EEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDR+K+VPNI+ VN+ILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLL+KEWGIQGKSLR+LLLRNPKVLGY VD
Subjt:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

A0A6J1JTP6 uncharacterized protein LOC111489650

9.20e-129

84.26

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSL SPIST+DS TR C ST C  TA S AVCS+VSFS   AK+ I  VRRQ+ YPRKWEI S++QVESL+LSD+DKKTWEACRQALS+FSFS EEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDR+K+VPNI+ VN+ILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLL+KEWGIQGKSLRNLLLRNPKVLGY VD
Subjt:  DKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

SwissProt top hits

e value

%identity

Alignment

Q6AUK6 Transcription termination factor MTERF4, chloroplastic

9.4e-04

30.43

Show/hide

Query:  EIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG
        +I+   +E+L  +GL    ++++++K P VLG  LE ++K N++ L  E+G++ ++L  ++ + P +LG
Subjt:  EIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG

Q9ZT96 Transcription termination factor MTERF4, chloroplastic

1.1e-04

30.88

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Query:  IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG
        I+  ++EYL  LG+     ++L++K P +LG  L+  +K NVQ+L +++ ++  SL +++ + P+++G
Subjt:  IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG

Arabidopsis top hits

e value

%identity

Alignment

AT4G02990.1 Mitochondrial transcription termination factor family protein

7.9e-06

30.88

Show/hide

Query:  IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG
        I+  ++EYL  LG+     ++L++K P +LG  L+  +K NVQ+L +++ ++  SL +++ + P+++G
Subjt:  IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG

AT4G09620.1 Mitochondrial transcription termination factor family protein

4.7e-67

57.27

Show/hide

Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAV--CSHVSFSCHSAKHTIKGVRRQNSYPR-KWEI-CSSTQVESLILSDEDKKTWEACRQALSVFSFS
        M+G SLASP++T+ SA       +C   +  D V   + +    +S+ H + G  R +SY R KW + CS+TQVE+   S+ED   WE C++ALS F FS
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAV--CSHVSFSCHSAKHTIKGVRRQNSYPR-KWEI-CSSTQVESLILSDEDKKTWEACRQALSVFSFS

Query:  VEEQDKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG
        VEE+DK+LGKAFGHIHSPYW E+R K+ P +E +N ILE+LR+LGLS++DL K++KKFPEVLGC+LE+E+K N+ +L+ +WGI GK LRNLLLRNPKVLG
Subjt:  VEEQDKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG

Query:  YYVDCKGDCIAKCTRCWVRF
        Y VDCKGDC+A+CTRCWVRF
Subjt:  YYVDCKGDCIAKCTRCWVRF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATGGGATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTCGCTGCACTGCCACAGCCATATCAGATGCTGT
ATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATTCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTG
AAAGCTTAATATTAAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCG
TTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAA
TGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAG
GCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKA
FGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF

Cucsat.G4801 (gene) of Cucumber (B10) v3 genome