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Cucsat.G4847 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G4847
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionhigh mobility group
Genome locationctg1227:4999413..5003394
RNA-Seq ExpressionCucsat.G4847
SyntenyCucsat.G4847
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008455869.1 PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo]8.70e-4887.13Show/hide
Query:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKN
        KLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDA        EKAPYAEKALKRKAEYEIALEAYKN
Subjt:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKN

Query:  N
        N
Subjt:  N

XP_008455870.1 PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo]8.86e-5194.62Show/hide
Query:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN
        KLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN
Subjt:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN

XP_011650215.2 high mobility group B protein 3-like isoform X1 [Cucumis sativus]2.32e-100100Show/hide
Query:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLVIKLFP
        KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLVIKLFP
Subjt:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLVIKLFP

Query:  LYLYFHSFSFTSSEDDHHGFIDHRISLLSNISWFTELPSESQNANRITEINL
        LYLYFHSFSFTSSEDDHHGFIDHRISLLSNISWFTELPSESQNANRITEINL
Subjt:  LYLYFHSFSFTSSEDDHHGFIDHRISLLSNISWFTELPSESQNANRITEINL

XP_031737208.1 high mobility group B protein 3-like isoform X2 [Cucumis sativus]3.08e-55100Show/hide
Query:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
Subjt:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

XP_038902242.1 high mobility group B protein 1-like [Benincasa hispida]1.50e-4788.54Show/hide
Query:  LKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        LKQRK EMKSTKSKK   KDQNAPKRPAT FFVFMEEFRKT+KE+FPDAKAGPVVGK GGEKWKSMSD EKAPYAEKAL+RKAEYEIALEAYK NL
Subjt:  LKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

TrEMBL top hitse value%identityAlignment
A0A1S3C1W5 HMG1/2-like protein isoform X14.21e-4887.13Show/hide
Query:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKN
        KLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDA        EKAPYAEKALKRKAEYEIALEAYKN
Subjt:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKN

Query:  N
        N
Subjt:  N

A0A1S3C2L9 high mobility group B protein 1-like isoform X24.29e-5194.62Show/hide
Query:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN
        KLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN
Subjt:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN

A0A5D3DLQ9 High mobility group B protein 1-like isoform X26.99e-4794.12Show/hide
Query:  MKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN
        MKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN
Subjt:  MKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN

A0A6J1G5W3 high mobility group B protein 3-like3.15e-4483.33Show/hide
Query:  LKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        LK+RKAEMKSTKS K   KDQNAPKRPAT FF+FMEEFRKT+KE+FPDAKAGP VGK GGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YK  L
Subjt:  LKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

A0A6J1I4V5 high mobility group B protein 3-like3.15e-4483.33Show/hide
Query:  LKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        LK+RKAEMKSTKS K   KDQNAPKRPAT FF+FMEEFRKT+KE+FPDAKAGP VGK GGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YK  L
Subjt:  LKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 18.4e-2258.7Show/hide
Query:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  NL
Subjt:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

O49596 High mobility group B protein 21.0e-1950Show/hide
Query:  LKGFKNSWEILQKKLKQRKAEMKST---KSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYE
        +KG K+  E    KL   K   K     K+  KD N PKRPA+ FFVFME+FR+T+K++ P  K+   VGK  G+KWKS+SD+EKAPY  KA KRK EYE
Subjt:  LKGFKNSWEILQKKLKQRKAEMKST---KSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYE

Query:  IALEAYKNNL
          ++AY   L
Subjt:  IALEAYKNNL

P40619 HMG1/2-like protein9.2e-2158.43Show/hide
Query:  LKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAY
        +K++ A+ K TK   KD N PKRP + FFVFME+FRKTYKE+ P+ K+  VVGK GG+KWK ++ AEKAP+  KA KRK EYE  L+AY
Subjt:  LKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAY

P40620 HMG1/2-like protein5.6e-1853.33Show/hide
Query:  KAEMKSTKSKK-KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        K   K  K K+ KD N PKRP + FFVFM +FR+ YK+  P+ K+   VGK  GE+WKS+S+ EKAPY ++ALK+K EYEI L+AY   L
Subjt:  KAEMKSTKSKK-KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

P93047 High mobility group B protein 32.2e-2254.21Show/hide
Query:  LKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIAL
        +KG K+  E    KL   K   K  K   KD N PKRP++ FFVFME+FR TYKE+ P  K+   VGK GGEKWKS+SD+EKAPY  KA KRK EYE  +
Subjt:  LKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIAL

Query:  EAYKNNL
        +AY   L
Subjt:  EAYKNNL

Arabidopsis top hitse value%identityAlignment
AT1G20696.1 high mobility group B31.6e-2354.21Show/hide
Query:  LKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIAL
        +KG K+  E    KL   K   K  K   KD N PKRP++ FFVFME+FR TYKE+ P  K+   VGK GGEKWKS+SD+EKAPY  KA KRK EYE  +
Subjt:  LKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIAL

Query:  EAYKNNL
        +AY   L
Subjt:  EAYKNNL

AT1G20696.2 high mobility group B38.3e-2554.95Show/hide
Query:  LKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIAL
        +KG K+  E    KL   K   K  K   KD N PKRP++ FFVFME+FR TYKE+ P  K+   VGK GGEKWKS+SD+EKAPY  KA KRK EYE  +
Subjt:  LKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIAL

Query:  EAYKNNLVIKL
        +AY   LVI L
Subjt:  EAYKNNLVIKL

AT1G20696.3 high mobility group B31.6e-2354.21Show/hide
Query:  LKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIAL
        +KG K+  E    KL   K   K  K   KD N PKRP++ FFVFME+FR TYKE+ P  K+   VGK GGEKWKS+SD+EKAPY  KA KRK EYE  +
Subjt:  LKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIAL

Query:  EAYKNNL
        +AY   L
Subjt:  EAYKNNL

AT3G51880.1 high mobility group B15.9e-2358.7Show/hide
Query:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  NL
Subjt:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

AT3G51880.2 high mobility group B15.9e-2358.7Show/hide
Query:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  NL
Subjt:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACAAATTCTCTGTTGATTTTTATCTTGAGGATAACAAAGAAAACTTTGTGTTGTTCTTTGAAAGGATTCAAGAATTCTTGGGAGATTTTACAAAAGAAGCTGAAGCAGAG
AAAAGCTGAAATGAAATCCACGAAAAGCAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGACATTCTTCGTTTTCATGGAGGAATTTAGAAAGACGTACAAGG
AGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGTTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTATGCTGAAAAAGCTTTGAAA
AGAAAGGCAGAGTATGAAATAGCTCTTGAAGCATACAAGAACAACCTCGTAATTAAATTGTTCCCACTCTATCTCTACTTTCACTCTTTCTCCTTCACTTCGTCAGAAGA
TGATCACCACGGTTTTATTGATCATCGAATCTCTCTTCTCTCTAACATCTCATGGTTCACAGAATTGCCCTCAGAATCACAGAATGCCAACAGAATCACAGAAATCAACC
TCTGA
mRNA sequenceShow/hide mRNA sequence
ACAAATTCTCTGTTGATTTTTATCTTGAGGATAACAAAGAAAACTTTGTGTTGTTCTTTGAAAGGATTCAAGAATTCTTGGGAGATTTTACAAAAGAAGCTGAAGCAGAG
AAAAGCTGAAATGAAATCCACGAAAAGCAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGACATTCTTCGTTTTCATGGAGGAATTTAGAAAGACGTACAAGG
AGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGTTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTATGCTGAAAAAGCTTTGAAA
AGAAAGGCAGAGTATGAAATAGCTCTTGAAGCATACAAGAACAACCTCGTAATTAAATTGTTCCCACTCTATCTCTACTTTCACTCTTTCTCCTTCACTTCGTCAGAAGA
TGATCACCACGGTTTTATTGATCATCGAATCTCTCTTCTCTCTAACATCTCATGGTTCACAGAATTGCCCTCAGAATCACAGAATGCCAACAGAATCACAGAAATCAACC
TCTGA
Protein sequenceShow/hide protein sequence
TNSLLIFILRITKKTLCCSLKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALK
RKAEYEIALEAYKNNLVIKLFPLYLYFHSFSFTSSEDDHHGFIDHRISLLSNISWFTELPSESQNANRITEINL