CuGenDBv2

Gene ID	Cucsat.G486
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	photosynthetic NDH subunit of subcomplex B 5, chloroplastic
Genome location	ctg1:9630530..9632081
RNA-Seq Expression	Cucsat.G486
Synteny	Cucsat.G486
Gene Ontology terms	GO:0006979 - response to oxidative stress (biological process) GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR034569 - Photosynthetic NDH subunit of subcomplex B 5, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049312.1 photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa]

7.07e-152

94.64

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Query:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
        MA  SSLPVLSFNPIPKIIF SSEI++A PFSI+ I G+NGISSSKLLGKLTRRSLS RLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
Subjt:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT

Query:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
        YFEGEKKGTFWGAIADDIAAVGPPTGFQ LISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
Subjt:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD

Query:  IWEFNEKYGDLWDFTVKNDDITKT
        IWEFNEKYGDLWDFTVKNDDITKT
Subjt:  IWEFNEKYGDLWDFTVKNDDITKT

KAG7028861.1 Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.43e-143

89.69

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Query:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
        MALCSSLPVLSFNP+PKIIFKSSEI SAT FS R I G NGIS++KLLGK  R S   RLNAAGLSEIEPDLNEDPVDRWETNSVS EDFEYGVYDGHHT
Subjt:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT

Query:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
        YFEGEKKGTFWGAIADDIAAVGPPTGFQ  ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISDYNTMD
Subjt:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD

Query:  IWEFNEKYGDLWDFTVKNDDITK
        IWEFNEKYGDLWDFTVKNDDITK
Subjt:  IWEFNEKYGDLWDFTVKNDDITK

XP_004134105.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucumis sativus]

3.14e-162

99.55

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Query:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
        MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
Subjt:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT

Query:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
        YFEGEKKGTFWGAIADDIAAVGPPTGFQ LISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
Subjt:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD

Query:  IWEFNEKYGDLWDFTVKNDDITKT
        IWEFNEKYGDLWDFTVKNDDITKT
Subjt:  IWEFNEKYGDLWDFTVKNDDITKT

XP_008438595.1 PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 [Cucumis melo]

1.00e-151

94.64

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Query:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
        MA  SSLPVLSFNPIPKIIF SSEI++A PFSI+ I G+NGISSSKLLGKLTRRSLS RLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
Subjt:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT

Query:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
        YFEGEKKGTFWGAIADDIAAVGPPTGFQ LISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
Subjt:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD

Query:  IWEFNEKYGDLWDFTVKNDDITKT
        IWEFNEKYGDLWDFTVKNDDITKT
Subjt:  IWEFNEKYGDLWDFTVKNDDITKT

XP_038878594.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida]

1.79e-145

91.93

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Query:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
        MA CSSLPVLSFNPIPKIIFKSSEI SAT FS + I  +NGIS+SKLLG LTRRSLS RLNAAGLSEIE DLNEDPVDRWETNSVSPEDFEYGVYDGHHT
Subjt:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT

Query:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
        YFEGEKKGTFWGAIADDIAAVGPPTGFQ +ISWLFLPAVAAGMYFN+PGEYLYIGAAIFTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISDYNTMD
Subjt:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD

Query:  IWEFNEKYGDLWDFTVKNDDITK
        IWEFNEKYGDLWDFTVKN+DITK
Subjt:  IWEFNEKYGDLWDFTVKNDDITK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8H7 Uncharacterized protein

1.52e-162

99.55

Show/hide

Query:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
        MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
Subjt:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT

Query:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
        YFEGEKKGTFWGAIADDIAAVGPPTGFQ LISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
Subjt:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD

Query:  IWEFNEKYGDLWDFTVKNDDITKT
        IWEFNEKYGDLWDFTVKNDDITKT
Subjt:  IWEFNEKYGDLWDFTVKNDDITKT

A0A1S3AXF4 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2

4.86e-152

94.64

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Query:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
        MA  SSLPVLSFNPIPKIIF SSEI++A PFSI+ I G+NGISSSKLLGKLTRRSLS RLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
Subjt:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT

Query:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
        YFEGEKKGTFWGAIADDIAAVGPPTGFQ LISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
Subjt:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD

Query:  IWEFNEKYGDLWDFTVKNDDITKT
        IWEFNEKYGDLWDFTVKNDDITKT
Subjt:  IWEFNEKYGDLWDFTVKNDDITKT

A0A5A7U0K2 Photosynthetic NDH subunit of subcomplex B 5

3.42e-152

94.64

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Query:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
        MA  SSLPVLSFNPIPKIIF SSEI++A PFSI+ I G+NGISSSKLLGKLTRRSLS RLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
Subjt:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT

Query:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
        YFEGEKKGTFWGAIADDIAAVGPPTGFQ LISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
Subjt:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD

Query:  IWEFNEKYGDLWDFTVKNDDITKT
        IWEFNEKYGDLWDFTVKNDDITKT
Subjt:  IWEFNEKYGDLWDFTVKNDDITKT

A0A6J1GAI7 photosynthetic NDH subunit of subcomplex B 5, chloroplastic

7.95e-142

88.79

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Query:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
        MALCSSLPVLSFNP+PKIIFKSS I  AT FS R I G NGIS++KLLGK  R S   RLNAAGLSEIEPDLNEDPVDRWETNSVS EDFEYGVYDGHHT
Subjt:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT

Query:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
        YFEGEKKGTFWGAIADDIAAVGPPTGFQ  ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISDYNTMD
Subjt:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD

Query:  IWEFNEKYGDLWDFTVKNDDITK
        IWEFNEKYGDLWDFTVKNDDITK
Subjt:  IWEFNEKYGDLWDFTVKNDDITK

A0A6J1IBC3 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1

1.38e-142

89.24

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Query:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT
        MALCSSLPVLSFNP+PKIIFKSS I SAT FS R I G NGIS++KLLGK  R S   RLNAAGLSEIEPDLNEDPVDRWETNSVS EDFEYGVYDGHHT
Subjt:  MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHT

Query:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD
        YFEGEKKGTFWGAIADDIAAVGPPTGFQ  ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISDYNTMD
Subjt:  YFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMD

Query:  IWEFNEKYGDLWDFTVKNDDITK
        IWEFNEKYGDLWDFTVKNDDITK
Subjt:  IWEFNEKYGDLWDFTVKNDDITK

SwissProt top hits

e value

%identity

Alignment

Q9FG89 Photosynthetic NDH subunit of subcomplex B 5, chloroplastic

6.3e-72

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Query:  GKLTRR-SLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGE-KKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFN
        GK  RR  L+  ++AAGLS+IEPD+NEDP+ ++ETNS+  EDF+YG YDG HTY+EGE +KGTFWGAIADDIAAV    GFQ LIS +FLPA+A GMYF+
Subjt:  GKLTRR-SLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGE-KKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFN

Query:  VPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI
         PGEYL+IGAA+FT+VFCIIE+DKPDQPHNFEPQIY +ERGARDKLI+DYNTM IW+FN+KYGD+WDFT++ DDI
Subjt:  VPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI

Arabidopsis top hits

e value

%identity

Alignment

AT5G43750.1 NAD(P)H dehydrogenase 18

4.5e-73

Show/hide

Query:  GKLTRR-SLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGE-KKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFN
        GK  RR  L+  ++AAGLS+IEPD+NEDP+ ++ETNS+  EDF+YG YDG HTY+EGE +KGTFWGAIADDIAAV    GFQ LIS +FLPA+A GMYF+
Subjt:  GKLTRR-SLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGE-KKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFN

Query:  VPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI
         PGEYL+IGAA+FT+VFCIIE+DKPDQPHNFEPQIY +ERGARDKLI+DYNTM IW+FN+KYGD+WDFT++ DDI
Subjt:  VPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI

Sequences

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CDS sequence

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ATGGCTCTCTGTTCTTCCCTCCCCGTTCTTTCTTTCAATCCAATCCCCAAAATCATCTTCAAATCTTCTGAAATTATTAGTGCTACACCGTTTTCGATTCGAAAGATTTC
GGGAACCAACGGAATCTCCTCCTCCAAGTTGCTTGGAAAATTGACGAGGAGAAGCCTCTCTCTGCGGCTCAATGCGGCAGGATTGTCCGAGATTGAACCCGACTTAAACG
AAGACCCTGTAGATCGTTGGGAAACTAACAGCGTCAGCCCTGAAGATTTTGAGTATGGAGTATACGATGGACATCACACTTACTTTGAAGGGGAGAAGAAAGGAACATTC
TGGGGAGCCATTGCAGATGATATTGCTGCAGTTGGACCCCCAACAGGCTTTCAGAGCCTCATCTCTTGGCTCTTCCTACCGGCAGTTGCTGCTGGAATGTACTTCAATGT
TCCGGGGGAGTATCTATACATTGGAGCAGCTATATTTACAATAGTATTCTGCATAATTGAAATTGACAAGCCAGACCAGCCACACAACTTCGAACCTCAGATATATAACA
TGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTCAAGAACGATGAT
ATAACAAAGACATGA

mRNA sequence

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Protein sequence

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MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTF
WGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDD
ITKT

Cucsat.G486 (gene) of Cucumber (B10) v3 genome