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Cucsat.G4935 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G4935
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDNA polymerase epsilon catalytic subunit A, putative
Genome locationctg1227:520544..521083
RNA-Seq ExpressionCucsat.G4935
SyntenyCucsat.G4935
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585589.1 hypothetical protein SDJN03_18322, partial [Cucurbita argyrosperma subsp. sororia]1.75e-6276.47Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLE+EHLRA+S+PVD     +TVG+DYKRSSSFP A      E  F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
         GWW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
XP_004152691.1 uncharacterized protein LOC101215562 [Cucumis sativus]8.13e-101100Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
XP_008444729.1 PREDICTED: uncharacterized protein LOC103487979 [Cucumis melo]7.64e-8889.8Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYWKSKRKLE+EHLRA+SLPVD RYD E VG+DYKRSSSFPPA+D VAVE+KFVENK+DRKNLEEL+K
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        +GWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNH+NGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
XP_022951681.1 uncharacterized protein LOC111454424 [Cucurbita moschata]1.23e-6276.47Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLE+EHLRA+S+PVD     +TVG+DYKRSSSFP A      E  F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
         GWW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
XP_038886573.1 uncharacterized protein LOC120076743 [Benincasa hispida]1.72e-7981.63Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLM GWNSPVLDPKSVKFKRNRSLTK+EIEAYWKSK+K E+EHLRA+S+PVD   D ETVG+DYKRSSSFPPAKD V+ EA+F EN ++R+NLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        IGWWTRSNSAFLNEPPVLDGA+K   SLYGVADVASCKLNHSNGVG+
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
TrEMBL top hitse value%identityAlignment
A0A0A0LRI3 Uncharacterized protein3.93e-101100Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
A0A1S3BBS7 uncharacterized protein LOC1034879793.70e-8889.8Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYWKSKRKLE+EHLRA+SLPVD RYD E VG+DYKRSSSFPPA+D VAVE+KFVENK+DRKNLEEL+K
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        +GWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNH+NGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
A0A5A7VD66 Putative DNA polymerase epsilon catalytic subunit A3.70e-8889.8Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYWKSKRKLE+EHLRA+SLPVD RYD E VG+DYKRSSSFPPA+D VAVE+KFVENK+DRKNLEEL+K
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        +GWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNH+NGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
A0A6J1GI71 uncharacterized protein LOC1114544245.96e-6376.47Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLE+EHLRA+S+PVD     +TVG+DYKRSSSFP A      E  F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
         GWW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
A0A6J1KP90 uncharacterized protein LOC1114963581.20e-6276.47Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLE+EHLRA+S+PVD     +TVG+DYKRSSSFP A      E  F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
         GWW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19530.1 unknown protein6.0e-1437.5Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRK-LEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELK
        MGSLM GW+S V DPKSV  +R +SLT+EEI+ +WK+K+K  E+EH++A S  V                          A E K V++  + ++    K
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRK-LEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELK

Query:  KIGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVA
          GWW ++  AFLNEP   +G     VS + VA +A
Subjt:  KIGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTAAACGACTTATTTTCGCTCAATTTTTTCCGCCAACCTAAAATTTTTCAGTATCGAAGAGAAATGGGCTCTCTAATGGGCGGATGGAATTCTCCCGTTCTCGATCCCAA
ATCAGTCAAGTTCAAGAGAAATCGGTCACTTACGAAAGAAGAAATCGAAGCATACTGGAAATCGAAGAGGAAATTGGAGAAAGAACATCTCAGAGCGGTTTCTTTGCCGG
TGGACGATCGTTATGATTGTGAAACAGTCGGATTAGACTACAAAAGGTCGAGTTCGTTTCCGCCGGCGAAGGACGACGTTGCGGTGGAAGCAAAATTTGTTGAGAACAAA
ATGGACAGAAAAAACCTAGAGGAATTGAAGAAAATTGGCTGGTGGACGAGGAGTAATTCGGCGTTTCTGAATGAACCGCCAGTCCTCGACGGCGCTTCAAAAGCTTGCGT
GTCGTTGTACGGCGTCGCCGACGTGGCGTCGTGTAAGTTGAATCACAGCAATGGAGTCGGTGCTTAG
mRNA sequenceShow/hide mRNA sequence
GTAAACGACTTATTTTCGCTCAATTTTTTCCGCCAACCTAAAATTTTTCAGTATCGAAGAGAAATGGGCTCTCTAATGGGCGGATGGAATTCTCCCGTTCTCGATCCCAA
ATCAGTCAAGTTCAAGAGAAATCGGTCACTTACGAAAGAAGAAATCGAAGCATACTGGAAATCGAAGAGGAAATTGGAGAAAGAACATCTCAGAGCGGTTTCTTTGCCGG
TGGACGATCGTTATGATTGTGAAACAGTCGGATTAGACTACAAAAGGTCGAGTTCGTTTCCGCCGGCGAAGGACGACGTTGCGGTGGAAGCAAAATTTGTTGAGAACAAA
ATGGACAGAAAAAACCTAGAGGAATTGAAGAAAATTGGCTGGTGGACGAGGAGTAATTCGGCGTTTCTGAATGAACCGCCAGTCCTCGACGGCGCTTCAAAAGCTTGCGT
GTCGTTGTACGGCGTCGCCGACGTGGCGTCGTGTAAGTTGAATCACAGCAATGGAGTCGGTGCTTAG
Protein sequenceShow/hide protein sequence
VNDLFSLNFFRQPKIFQYRREMGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRSSSFPPAKDDVAVEAKFVENK
MDRKNLEELKKIGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA