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Cucsat.G4990 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G4990
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRibosomal RNA small subunit methyltransferase A
Genome locationctg1227:1450344..1453429
RNA-Seq ExpressionCucsat.G4990
SyntenyCucsat.G4990
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152600.1 uncharacterized protein LOC101213956 [Cucumis sativus]9.81e-124100Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC
        GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC
Subjt:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC

XP_008444920.1 PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo]4.00e-12398.25Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGAN+SSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC
        GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSAESKKYMEQWLSSLQNC
Subjt:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC

XP_022997281.1 uncharacterized protein LOC111492231 isoform X2 [Cucurbita maxima]9.77e-11593.57Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC
        GWSEPHGPGFQSDD+SDNSFAVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS ESKKYMEQWLSSLQNC
Subjt:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC

XP_023545352.1 uncharacterized protein LOC111804795 isoform X2 [Cucurbita pepo subsp. pepo]1.39e-11492.98Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSNGGS+LNASLDTANRETDTLKF LVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC
        GWSEPHGPGFQSDD+SDNSFAVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS ESKKYMEQWLSSLQNC
Subjt:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC

XP_038886443.1 uncharacterized protein LOC120076637 [Benincasa hispida]1.98e-12399.42Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC
        GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC
Subjt:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC

TrEMBL top hitse value%identityAlignment
A0A1S3BB05 uncharacterized protein LOC1034881211.94e-12398.25Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGAN+SSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC
        GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSAESKKYMEQWLSSLQNC
Subjt:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC

A0A6J1HCV2 uncharacterized protein LOC111462457 isoform X12.33e-11393.02Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFS-AESKKYMEQWLSSLQNC
        GWSEPHGPGFQSDD+SDNSFAVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS AESKKYMEQWLS+LQNC
Subjt:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFS-AESKKYMEQWLSSLQNC

A0A6J1HCV7 uncharacterized protein LOC111462457 isoform X21.36e-11492.98Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC
        GWSEPHGPGFQSDD+SDNSFAVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS ESKKYMEQWLS+LQNC
Subjt:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC

A0A6J1K730 uncharacterized protein LOC111492231 isoform X24.73e-11593.57Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC
        GWSEPHGPGFQSDD+SDNSFAVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS ESKKYMEQWLSSLQNC
Subjt:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC

A0A6J1KDE3 uncharacterized protein LOC111492231 isoform X18.13e-11493.6Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFS-AESKKYMEQWLSSLQNC
        GWSEPHGPGFQSDD+SDNSFAVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS AESKKYMEQWLSSLQNC
Subjt:  GWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFS-AESKKYMEQWLSSLQNC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G38060.1 unknown protein3.7e-1138.94Show/hide
Query:  RETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDE-SDNSFAVLVPCYGRIYNDFVD
        +ET+ LKFP       +  +R  KRK    E         + +V  DG           +WS+GW+EPHGP FQSDDE +D  F VLVPCY R   +   
Subjt:  RETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDE-SDNSFAVLVPCYGRIYNDFVD

Query:  ETKNSILSAVGNI
           N +LSAV N+
Subjt:  ETKNSILSAVGNI

AT4G38060.2 unknown protein1.6e-1741.35Show/hide
Query:  RETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDE-SDNSFAVLVPCYGRIYNDFVD
        +ET+ LKFP       +  +R  KRK    E         + +V  DG           +WS+GW+EPHGP FQSDDE +D  F VLVPCY R   +   
Subjt:  RETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDE-SDNSFAVLVPCYGRIYNDFVD

Query:  ETKNSILSAVGNINDSFSAESKKYMEQWLSSLQ
           N +LSAV N+ +    + K YMEQWLSSLQ
Subjt:  ETKNSILSAVGNINDSFSAESKKYMEQWLSSLQ

AT5G65480.1 unknown protein3.5e-1736.42Show/hide
Query:  MSVAFPQLSWWLWSG---KHKEPRSS--NGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDD
        M+V+FP+L  WL  G   K +E + S   G S+L+ SL    ++T T K       + SSS ++ KR W  R       E D +      G V   E DD
Subjt:  MSVAFPQLSWWLWSG---KHKEPRSS--NGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDD

Query:  SDWSIGWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSL
         +WSIGW EPHGPGF+++D+    F VLVP Y ++ +   ++  N   S         +A   K MEQWLSS+
Subjt:  SDWSIGWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCGAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAA
CCGGGAAACGGACACTCTAAAATTTCCTTTAGTTAATGGGGCCAACTTATCATCCTCATCTAGAAGGGTGAAGAGGAAATGGCATAGTCGAGAAGAAAGAAAAATTGATA
GGGAATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGATTCAGATTGGTCGATCGGATGGTCGGAGCCCCACGGACCTGGATTC
CAGAGTGATGATGAATCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGTGCCGTTGG
GAACATTAACGACAGTTTTTCTGCTGAGAGCAAGAAATATATGGAACAGTGGCTGTCCTCTCTTCAGAACTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCGAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAA
CCGGGAAACGGACACTCTAAAATTTCCTTTAGTTAATGGGGCCAACTTATCATCCTCATCTAGAAGGGTGAAGAGGAAATGGCATAGTCGAGAAGAAAGAAAAATTGATA
GGGAATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGATTCAGATTGGTCGATCGGATGGTCGGAGCCCCACGGACCTGGATTC
CAGAGTGATGATGAATCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGTGCCGTTGG
GAACATTAACGACAGTTTTTCTGCTGAGAGCAAGAAATATATGGAACAGTGGCTGTCCTCTCTTCAGAACTGCTAA
Protein sequenceShow/hide protein sequence
MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGF
QSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC