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Cucsat.G508 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G508
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionpre-rRNA-processing protein TSR2 homolog
Genome locationctg1:9972576..9973504
RNA-Seq ExpressionCucsat.G508
SyntenyCucsat.G508
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR019398 - Pre-rRNA-processing protein TSR2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134444.1 pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus]2.06e-75100Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLVGSR
        QLMMIYEENLVGSR
Subjt:  QLMMIYEENLVGSR

XP_008438673.1 PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis melo]6.88e-7297.39Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ-VA
        MEPIDGLTSTNYKAGSVS+LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFS+SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ VA
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ-VA

Query:  EQLMMIYEENLVGSR
        EQLMMIYEENLVGSR
Subjt:  EQLMMIYEENLVGSR

XP_008438674.1 PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]9.83e-7498.25Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MEPIDGLTSTNYKAGSVS+LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFS+SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLVGSR
        QLMMIYEENLVGSR
Subjt:  QLMMIYEENLVGSR

XP_011650975.1 pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus]1.44e-7399.13Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ-VA
        MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ VA
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ-VA

Query:  EQLMMIYEENLVGSR
        EQLMMIYEENLVGSR
Subjt:  EQLMMIYEENLVGSR

XP_038881388.1 pre-rRNA-processing protein TSR2 homolog [Benincasa hispida]2.61e-6993.86Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME IDGLTSTNYKAGSVS+LQ AISSVFSRWDGLQMAIENQWGGRDSHQKSLNL SDVF+WFS SKPPLYVEDLE LLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLVGSR
        QLMMIYEENLVGSR
Subjt:  QLMMIYEENLVGSR

TrEMBL top hitse value%identityAlignment
A0A0A0L7I9 Uncharacterized protein9.99e-76100Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLVGSR
        QLMMIYEENLVGSR
Subjt:  QLMMIYEENLVGSR

A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X24.76e-7498.25Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MEPIDGLTSTNYKAGSVS+LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFS+SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLVGSR
        QLMMIYEENLVGSR
Subjt:  QLMMIYEENLVGSR

A0A1S3AX32 pre-rRNA-processing protein TSR2 isoform X13.33e-7297.39Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ-VA
        MEPIDGLTSTNYKAGSVS+LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFS+SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ VA
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ-VA

Query:  EQLMMIYEENLVGSR
        EQLMMIYEENLVGSR
Subjt:  EQLMMIYEENLVGSR

A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X24.76e-7498.25Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MEPIDGLTSTNYKAGSVS+LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFS+SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLVGSR
        QLMMIYEENLVGSR
Subjt:  QLMMIYEENLVGSR

A0A6J1C959 pre-rRNA-processing protein TSR2 homolog1.21e-6791.23Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLVGSR
        QLMMIYEE+L GSR
Subjt:  QLMMIYEENLVGSR

SwissProt top hitse value%identityAlignment
Q06672 Pre-rRNA-processing protein TSR28.9e-0633.68Show/hide
Query:  SNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLS----FNTEIEDGSIEQVAEQLMMIYEE
        +  ++ +S V  +WD L +A+EN WGG DS +K   +   V   F + K    V D   L+ ETLL +    F T +ED S   +A +++ IY +
Subjt:  SNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLS----FNTEIEDGSIEQVAEQLMMIYEE

Q3KRG3 Pre-rRNA-processing protein TSR2 homolog1.2e-0530.23Show/hide
Query:  AISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEE
        A+ +V   W  LQ+A++N +GG  S QK+  +V  +  +F+     L  +++E+ + E +   F+T ++DGS+ QVA+Q+  ++++
Subjt:  AISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEE

Q3T090 Pre-rRNA-processing protein TSR2 homolog1.0e-0632.61Show/hide
Query:  AISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSR
        A+ +    W  LQ+A+EN +GG  S +K+  L   V  +F  +   L ++++E+ L E ++  F+T +EDGS+ QV++QL  ++     G R
Subjt:  AISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSR

Q8C8T8 Pre-rRNA-processing protein TSR2 homolog6.1e-0734.52Show/hide
Query:  AISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIY
        A+ +    W  LQ+A+EN +GG  S +K+  L   V  +F  +   L +E++E+ L E +   F+T +EDGS+ QV++QL  ++
Subjt:  AISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIY

Q969E8 Pre-rRNA-processing protein TSR2 homolog4.0e-0633.73Show/hide
Query:  ISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIY
        + +    W  LQ+A+EN +GG  S +K+  L   V  +F  +   L ++++E+ L E L   F+T +EDGS+ QV++QL  ++
Subjt:  ISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIY

Arabidopsis top hitse value%identityAlignment
AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region3.9e-2560.42Show/hide
Query:  SNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGS
        S LQ  I  + SRW GLQMA++NQWGG DS +KS  L  ++F   S S   + VE++ENLLHE+LLLSFNTEIEDGSIE+VAEQLM+++EE+L G+
Subjt:  SNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGS

AT5G27990.1 Pre-rRNA-processing protein TSR2, conserved region6.5e-1241.76Show/hide
Query:  LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENL--LHETLLLSFNTEIEDGSIEQVAEQLMMIYEE
        L+  I  +  RW  ++ A+EN WGGRDS  K+   V+ VF +F  SK P  V+D+E L  L +  L   NT  EDGS+++VA  L+ +YE+
Subjt:  LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENL--LHETLLLSFNTEIEDGSIEQVAEQLMMIYEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCAATTGATGGATTAACCTCAACCAATTACAAGGCGGGATCTGTCTCCAACCTCCAAATGGCCATTTCATCAGTGTTTTCACGGTGGGACGGCCTTCAAATGGC
CATTGAAAATCAATGGGGAGGTCGCGACTCTCACCAAAAATCACTGAATCTCGTCTCTGATGTCTTCTCTTGGTTCTCTCATTCCAAACCTCCTTTATACGTGGAAGATC
TAGAAAATCTGCTCCATGAAACTCTATTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAACAATTGATGATGATATACGAAGAAAATTTG
GTGGGAAGTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCAATTGATGGATTAACCTCAACCAATTACAAGGCGGGATCTGTCTCCAACCTCCAAATGGCCATTTCATCAGTGTTTTCACGGTGGGACGGCCTTCAAATGGC
CATTGAAAATCAATGGGGAGGTCGCGACTCTCACCAAAAATCACTGAATCTCGTCTCTGATGTCTTCTCTTGGTTCTCTCATTCCAAACCTCCTTTATACGTGGAAGATC
TAGAAAATCTGCTCCATGAAACTCTATTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAACAATTGATGATGATATACGAAGAAAATTTG
GTGGGAAGTCGTTAG
Protein sequenceShow/hide protein sequence
MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENL
VGSR