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Cucsat.G5155 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G5155
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description50S ribosomal protein L30
Genome locationctg1227:4657335..4662902
RNA-Seq ExpressionCucsat.G5155
SyntenyCucsat.G5155
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010749.1 rpmD [Cucurbita argyrosperma subsp. argyrosperma]5.21e-6492.59Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKA+VPI WS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

XP_004151902.1 uncharacterized protein LOC101219925 [Cucumis sativus]9.72e-69100Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

XP_008455933.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo]2.29e-6798.15Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

XP_022944386.1 uncharacterized protein LOC111448848 [Cucurbita moschata]2.58e-6492.59Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKA+VPI WS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]4.46e-6594.44Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKA+VPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

TrEMBL top hitse value%identityAlignment
A0A0A0LN29 Ribosomal_L30 domain-containing protein4.71e-69100Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A1S3C214 50S ribosomal protein L301.11e-6798.15Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A5A7VAZ6 50S ribosomal protein L301.11e-6798.15Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A6J1CI25 uncharacterized protein LOC1110111341.46e-6392.52Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKA+VPIAWS NLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQK+EQH+ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASA
         PSS SA
Subjt:  APSSASA

A0A6J1FUA4 uncharacterized protein LOC1114488481.25e-6492.59Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKA+VPI WS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

SwissProt top hitse value%identityAlignment
A4QBL5 50S ribosomal protein L301.6e-0448.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

A8ZV75 50S ribosomal protein L301.6e-0445.61Show/hide
Query:  STNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GMI++V  L+ VE
Subjt:  STNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

C3PL27 50S ribosomal protein L301.2e-0442.59Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Q8FS51 50S ribosomal protein L309.3e-0548.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Q8NSX3 50S ribosomal protein L309.3e-0548.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein9.8e-3465.14Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINH-L
        M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RGMI QVKR+VVVETEEMY ARK+    H+ALRPPLV++H  
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINH-L

Query:  PAPSSASAS
        PA  S++ S
Subjt:  PAPSSASAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCTTCAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTACTAATCTTTATATCACATTAGTAAGAGGCATGCCAGGAACAAGGAGACTTCACAGACGTAC
ATTAGAGGCATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCGCTGGAACACTCCTACTGTTAGAGGAATGATTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAG
AAGAAATGTATAAAGCTCGTAAACAGAAGATGGAACAGCACAGGGCGCTACGACCGCCATTAGTTATAAATCACCTTCCGGCACCAAGTTCTGCTTCTGCCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCCTTCAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTACTAATCTTTATATCACATTAGTAAGAGGCATGCCAGGAACAAGGAGACTTCACAGACGTAC
ATTAGAGGCATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCGCTGGAACACTCCTACTGTTAGAGGAATGATTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAG
AAGAAATGTATAAAGCTCGTAAACAGAAGATGGAACAGCACAGGGCGCTACGACCGCCATTAGTTATAAATCACCTTCCGGCACCAAGTTCTGCTTCTGCCTCTTGA
Protein sequenceShow/hide protein sequence
MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS