; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G5220 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G5220
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDEAD-box ATP-dependent RNA helicase FANCM
Genome locationctg1227:3537263..3537969
RNA-Seq ExpressionCucsat.G5220
SyntenyCucsat.G5220
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0043138 - 3'-5' DNA helicase activity (molecular function)
InterPro domainsIPR014001 - Helicase superfamily 1/2, ATP-binding domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR039686 - FANCM/Mph1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652234.1 hypothetical protein Csa_022145 [Cucumis sativus]8.81e-7899.22Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV
        DNKLLEVMRPFVAKLRSIGILQNRDYRT+
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV

TYK06566.1 Fanconi anemia group M protein isoform X6 [Cucumis melo var. makuwa]1.42e-8098.44Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIP+PLRILALTATPGSKHQG+QQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRT
        DNKLLEVMRPFVAKLRSIGILQNRDYRT
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRT

XP_031736809.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X4 [Cucumis sativus]1.47e-7799.22Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV
        DNKLLEVMRPFVAKLRSIGILQNRDYRT+
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV

XP_031736811.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X6 [Cucumis sativus]1.12e-7799.22Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV
        DNKLLEVMRPFVAKLRSIGILQNRDYRT+
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV

XP_031736812.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Cucumis sativus]6.33e-7899.22Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV
        DNKLLEVMRPFVAKLRSIGILQNRDYRT+
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV

TrEMBL top hitse value%identityAlignment
A0A0A0LMN2 Helicase ATP-binding domain-containing protein7.94e-95100Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRTVWYKSFDAH
        DNKLLEVMRPFVAKLRSIGILQNRDYRTVWYKSFDAH
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRTVWYKSFDAH

A0A1S3B2S2 Fanconi anemia group M protein isoform X61.56e-7797.67Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIP+PLRILALTATPGSKHQG+QQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV
        DNKLLEVMRPFVAKLRSIGILQNRDYRT+
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV

A0A1S4DTZ2 Fanconi anemia group M protein isoform X51.65e-7797.67Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIP+PLRILALTATPGSKHQG+QQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV
        DNKLLEVMRPFVAKLRSIGILQNRDYRT+
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV

A0A5A7T298 Fanconi anemia group M protein isoform X61.17e-7797.67Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIP+PLRILALTATPGSKHQG+QQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV
        DNKLLEVMRPFVAKLRSIGILQNRDYRT+
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV

A0A5D3C8A5 Fanconi anemia group M protein isoform X66.87e-8198.44Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIP+PLRILALTATPGSKHQG+QQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRT
        DNKLLEVMRPFVAKLRSIGILQNRDYRT
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRT

SwissProt top hitse value%identityAlignment
A0A1D5PRR9 Fanconi anemia group M protein4.6e-2541.6Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTC    + CLV+DEAH+ALGN++YC  V+EL++     R+LALTATPGS  + +QQ++ NL I+ ++   E   ++ PY H+R++E I V +GE+   I
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRD
            + V+  F  +L  +G+L  RD
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRD

I3XHK1 DEAD-box ATP-dependent RNA helicase FANCM3.6e-4666.67Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCL  YLVCLVIDEAHRALGNYSYCV VREL  +P+ LRILALTATPGSK Q IQ IIDNL ISTL+YR+ESDHDV PYVHDRK+E+I+V +G+DA ++
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV
          +L  V+RP+  +L++ G+  NRD +T+
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV

Q7SDF3 ATP-dependent DNA helicase mph11.5e-2044.17Show/hide
Query:  KYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEIDNKLL
        K +V LVIDEAHRA G+Y+Y   V  L +     RILALTATPGS  +G+Q +IDNL IS ++ R E   D+  YVH R I  I     ++ +E+ +   
Subjt:  KYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEIDNKLL

Query:  EVMRPFVAKLRSIGILQNRD
        + ++P V KL S  I   RD
Subjt:  EVMRPFVAKLRSIGILQNRD

Q8BGE5 Fanconi anemia group M protein homolog3.9e-2443.7Show/hide
Query:  YLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEIDNKLLE
        ++ CLV+DEAH+ALGNY+YC  VREL K     RILAL+ATPGS  + +QQ+I NL I  ++ R E   D+ PY H+R++E + V +GE+   I    ++
Subjt:  YLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEIDNKLLE

Query:  VMRPFVAKLRSIGILQNRD
        ++  F + L    +L  RD
Subjt:  VMRPFVAKLRSIGILQNRD

Q8IYD8 Fanconi anemia group M protein2.3e-2444Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        G C    + CLVIDEAH+ALGNY+YC  VREL K     RILAL+ATPGS  + +QQ+I NL I  ++ R E   D+  Y H+RK+E + V +GE+   I
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRD
            ++++  F   L    +L  RD
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRD

Arabidopsis top hitse value%identityAlignment
AT1G35530.1 DEAD/DEAH box RNA helicase family protein2.6e-4766.67Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCL  YLVCLVIDEAHRALGNYSYCV VREL  +P+ LRILALTATPGSK Q IQ IIDNL ISTL+YR+ESDHDV PYVHDRK+E+I+V +G+DA ++
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV
          +L  V+RP+  +L++ G+  NRD +T+
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV

AT1G35530.2 DEAD/DEAH box RNA helicase family protein2.6e-4766.67Show/hide
Query:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI
        GTCL  YLVCLVIDEAHRALGNYSYCV VREL  +P+ LRILALTATPGSK Q IQ IIDNL ISTL+YR+ESDHDV PYVHDRK+E+I+V +G+DA ++
Subjt:  GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI

Query:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV
          +L  V+RP+  +L++ G+  NRD +T+
Subjt:  DNKLLEVMRPFVAKLRSIGILQNRDYRTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCACATGTTTGATGAAATACCTGGTTTGCTTAGTGATTGATGAAGCCCATCGAGCACTTGGAAATTACTCTTATTGTGTTGCAGTTCGTGAGTTAACAAAAATACCTGT
GCCACTAAGAATACTAGCCTTAACTGCCACACCAGGATCAAAGCATCAGGGTATTCAGCAAATCATTGACAACTTACACATTTCAACCCTTCAATATCGTGATGAAAGTG
ATCATGATGTCAGTCCATATGTTCATGACAGGAAAATAGAATTGATTCAAGTCGCAATGGGAGAAGATGCTGTTGAGATAGATAATAAGCTCCTGGAAGTTATGCGACCA
TTTGTGGCCAAACTTCGTTCAATAGGAATACTCCAGAACAGAGATTACAGAACGGTATGGTACAAGTCTTTTGATGCACATTAG
mRNA sequenceShow/hide mRNA sequence
GGCACATGTTTGATGAAATACCTGGTTTGCTTAGTGATTGATGAAGCCCATCGAGCACTTGGAAATTACTCTTATTGTGTTGCAGTTCGTGAGTTAACAAAAATACCTGT
GCCACTAAGAATACTAGCCTTAACTGCCACACCAGGATCAAAGCATCAGGGTATTCAGCAAATCATTGACAACTTACACATTTCAACCCTTCAATATCGTGATGAAAGTG
ATCATGATGTCAGTCCATATGTTCATGACAGGAAAATAGAATTGATTCAAGTCGCAATGGGAGAAGATGCTGTTGAGATAGATAATAAGCTCCTGGAAGTTATGCGACCA
TTTGTGGCCAAACTTCGTTCAATAGGAATACTCCAGAACAGAGATTACAGAACGGTATGGTACAAGTCTTTTGATGCACATTAG
Protein sequenceShow/hide protein sequence
GTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEIDNKLLEVMRP
FVAKLRSIGILQNRDYRTVWYKSFDAH