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Cucsat.G5447 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G5447
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDNA polymerase epsilon subunit C
Genome locationctg1269:385493..388399
RNA-Seq ExpressionCucsat.G5447
SyntenyCucsat.G5447
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035335.1 DNA polymerase epsilon subunit C [Cucumis melo var. makuwa]1.46e-10190.72Show/hide
Query:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK
        MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKKIS  ISTNNGSVKDN  LAVS PG SASED DAADEDKAETTSRK  TSKSKK
Subjt:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK

Query:  VKRNHAKEEDNRYAAEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVSILYF
        VKRNHAKEEDN YA EEE  AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVS+LYF
Subjt:  VKRNHAKEEDNRYAAEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVSILYF

XP_004149539.2 chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus]1.70e-11198.93Show/hide
Query:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK
        MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK
Subjt:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK

Query:  VKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
        VKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  VKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV

XP_008463933.1 PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]1.38e-9689.95Show/hide
Query:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK
        MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKKIS  ISTNNGSVKDN  LAVS PG SASED DAADEDKAETTSRK  TSKSKK
Subjt:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK

Query:  VKRNHAKEEDNRYAAEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
        VKRNHAKEEDN YA EEE  AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  VKRNHAKEEDNRYAAEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV

XP_031743864.1 DNA polymerase epsilon subunit 4 isoform X2 [Cucumis sativus]1.59e-111100Show/hide
Query:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK
        MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK
Subjt:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK

Query:  VKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL
        VKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL
Subjt:  VKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL

XP_038902902.1 DNA polymerase epsilon subunit C [Benincasa hispida]1.02e-9183.33Show/hide
Query:  PNVSLIFTNNQTLTMASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPG-ASASEDADAADEDK
        P V LIFTNN++LTMASSKKSSTEAKSKE GTSKP+PK KTHNNAR SDKD S KKKKKKK    IST NGSVKDN ALA S PG ASASE+ DA DED+
Subjt:  PNVSLIFTNNQTLTMASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPG-ASASEDADAADEDK

Query:  AETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKH
        AETTS K NTSKSKKV+RNH K+E+N YAAEEE  AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKH
Subjt:  AETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKH

Query:  LCNV
        L +V
Subjt:  LCNV

TrEMBL top hitse value%identityAlignment
A0A0A0KCQ2 CBFD_NFYB_HMF domain-containing protein8.21e-11298.93Show/hide
Query:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK
        MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK
Subjt:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK

Query:  VKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
        VKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  VKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV

A0A1S3CKU7 DNA polymerase epsilon subunit C6.68e-9789.95Show/hide
Query:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK
        MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKKIS  ISTNNGSVKDN  LAVS PG SASED DAADEDKAETTSRK  TSKSKK
Subjt:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK

Query:  VKRNHAKEEDNRYAAEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
        VKRNHAKEEDN YA EEE  AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  VKRNHAKEEDNRYAAEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV

A0A5A7T1L3 DNA polymerase epsilon subunit C7.08e-10290.72Show/hide
Query:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK
        MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKKIS  ISTNNGSVKDN  LAVS PG SASED DAADEDKAETTSRK  TSKSKK
Subjt:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKK

Query:  VKRNHAKEEDNRYAAEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVSILYF
        VKRNHAKEEDN YA EEE  AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVS+LYF
Subjt:  VKRNHAKEEDNRYAAEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVSILYF

A0A6J1JCZ8 DNA polymerase epsilon subunit C-like isoform X28.81e-7169.7Show/hide
Query:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKK---KKKKISISIS--TNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNT
        MASSKKSS+EAKSKE GTSKP+PK KTHNN  N++ +  K  K   KKKK+S + +  T+NGSVK+N  L +SAPG         A+ED+ ETTS+  NT
Subjt:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKK---KKKKISISIS--TNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNT

Query:  SKSKKVKRNHAKEEDNRYA---------AEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL
        SKSKKVKRNH K+E+N YA         AEEEAEEKIYKFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQDRKKSLAYKHL
Subjt:  SKSKKVKRNHAKEEDNRYA---------AEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL

A0A6J1JF10 DNA polymerase epsilon subunit C-like isoform X11.07e-7069.15Show/hide
Query:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKK---KKKKISISIS--TNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNT
        MASSKKSS+EAKSKE GTSKP+PK KTHNN  N++ +  K  K   KKKK+S + +  T+NGSVK+N  L +SAPG         A+ED+ ETTS+  NT
Subjt:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKK---KKKKISISIS--TNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNT

Query:  SKSKKVKRNHAKEEDNRYA---------AEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCN
        SKSKKVKRNH K+E+N YA         AEEEAEEKIYKFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQDRKKSLAYKHL +
Subjt:  SKSKKVKRNHAKEEDNRYA---------AEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCN

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
A6QQ14 DNA polymerase epsilon subunit 43.4e-0430.77Show/hide
Query:  KIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCN
        ++ + P+ R+K +++ +       QEA+F++ +A+E+F+    KDAY C  Q ++K+L  + L N
Subjt:  KIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCN

Q9NR33 DNA polymerase epsilon subunit 43.4e-0430.77Show/hide
Query:  KIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCN
        ++ + P+ R+K +++ +       QEA+F++ +A+E+F+    KDAY C  Q ++K+L  + L N
Subjt:  KIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCN

Arabidopsis top hitse value%identityAlignment
AT1G07980.1 nuclear factor Y, subunit C101.9e-1032.8Show/hide
Query:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNAR--NSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKS
        M SSKK   +    +V  +K S ++K  + +R   +   ++  KKK +   IS S+++ SV++             +   D A +     + R +  S  
Subjt:  MASSKKSSTEAKSKEVGTSKPSPKAKTHNNAR--NSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKS

Query:  KKVKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
           K +  +EED     +  AE+   KFPM+RI++IMR +NS  +I Q+A+FLVNKA+EMF+ +F ++AY    +D+KK + YKHL +V
Subjt:  KKVKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCAACGTTTCCCTAATTTTCACAAACAACCAAACATTAACAATGGCATCATCCAAAAAATCAAGTACGGAAGCGAAGAGCAAAGAAGTGGGAACCTCCAAGCCATCCCC
CAAAGCCAAGACCCACAACAATGCCAGAAATTCCGACAAGGATATTTCTAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCATTAGCACCAACAATGGCTCCGTCA
AGGACAACCACGCCTTAGCTGTTTCTGCTCCAGGAGCCTCAGCCTCTGAGGACGCCGATGCCGCCGATGAAGACAAAGCCGAAACCACAAGTAGAAAATCTAATACCTCC
AAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATCGTTATGCCGCAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAA
AATCATGAGGGATGAAAATTCTGATTTGCGTATTAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTCGTACAATTTTGCAAAGATGCATATGCAT
GTTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATGTAATGTTTCTATTCTCTATTTTATTGTTATATGTTCCATGTTCATTTGCATCTCTTGCATGAAC
TCATACGGTTTTTCCTTTTTTGCCTTTCTTGTCAGTTTTCTATAA
mRNA sequenceShow/hide mRNA sequence
CCCAACGTTTCCCTAATTTTCACAAACAACCAAACATTAACAATGGCATCATCCAAAAAATCAAGTACGGAAGCGAAGAGCAAAGAAGTGGGAACCTCCAAGCCATCCCC
CAAAGCCAAGACCCACAACAATGCCAGAAATTCCGACAAGGATATTTCTAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCATTAGCACCAACAATGGCTCCGTCA
AGGACAACCACGCCTTAGCTGTTTCTGCTCCAGGAGCCTCAGCCTCTGAGGACGCCGATGCCGCCGATGAAGACAAAGCCGAAACCACAAGTAGAAAATCTAATACCTCC
AAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATCGTTATGCCGCAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAA
AATCATGAGGGATGAAAATTCTGATTTGCGTATTAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTCGTACAATTTTGCAAAGATGCATATGCAT
GTTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATGTAATGTTTCTATTCTCTATTTTATTGTTATATGTTCCATGTTCATTTGCATCTCTTGCATGAAC
TCATACGGTTTTTCCTTTTTTGCCTTTCTTGTCAGTTTTCTATAA
Protein sequenceShow/hide protein sequence
PNVSLIFTNNQTLTMASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTS
KSKKVKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVSILYFIVICSMFICISCMN
SYGFSFFAFLVSFL