; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G5457 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G5457
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptiontRNA-intron lyase
Genome locationctg1269:561766..572193
RNA-Seq ExpressionCucsat.G5457
SyntenyCucsat.G5457
Gene Ontology termsGO:0000379 - tRNA-type intron splice site recognition and cleavage (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0000214 - tRNA-intron endonuclease complex (cellular component)
GO:0000213 - tRNA-intron endonuclease activity (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR006676 - tRNA-splicing endonuclease
IPR006677 - tRNA intron endonuclease, catalytic domain-like
IPR006678 - tRNA intron endonuclease, N-terminal
IPR011856 - tRNA endonuclease-like domain superfamily
IPR036167 - tRNA intron endonuclease, catalytic domain-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035302.1 tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo var. makuwa]1.75e-16694.14Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGKASEAKALADPIS+TVLHLQSSFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
        E NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL E  DSNGNGRLRVWSDFLCT+RLCGSVAKTLLVL+
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

KAG7010605.1 tRNA-splicing endonuclease subunit Sen2-1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.12e-14684.1Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        M PRWKGKASEA+ALADP+S  VL LQSS   S+AQGLLSG  ILY ADEEQTDLLNR CFGR I+TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
        EKN QELW+ MK++KATFPEFY+AY+HLR+KNW+VRPGSQYGVDFVAYRHHP+LVHSEFAVLVL E   SN N RLRVWSDFLCT+RLCGSVAKTLLVL+
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGSG VSPSCLD+YSIEERTVTRWSPEQCRENP KV
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

XP_004149565.1 tRNA-splicing endonuclease subunit Sen2-1 [Cucumis sativus]3.70e-20398.58Show/hide
Query:  MVVVKTPTVVFFIQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNR
        MVVVKTPTVVFFIQLTLPAAA FFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNT+LHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNR
Subjt:  MVVVKTPTVVFFIQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNR

Query:  TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSE
        TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSE
Subjt:  TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSE

Query:  FAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        FAVLVLCE  DSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
Subjt:  FAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

XP_008463899.1 PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo]2.22e-17693.41Show/hide
Query:  FFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEE
        F LLS V AVDFTVSPPASMAPRWKGKASEAKALADPIS+TVLHLQSSFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTAEKDKQWFQFGMEE
Subjt:  FFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEE

Query:  AFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSD
        AFYLSYHLNCLKIVDGQDCE NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL E  DSNGNGRLRVWSD
Subjt:  AFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSD

Query:  FLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        FLCT+RLCGSVAKTLLVL+VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  FLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

XP_038900547.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida]9.91e-15789.12Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGK SEAKALADP+SN VL LQSS   SNAQGLLSGS +LY ADEEQTDLLNR CFGRPILTAEKDKQWFQFGMEEAFYL YHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
        EKN QELW+ MK+QK TFPEFYIAY+HLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSE+AVLVL E   SN NGRLRVWSDFLCT+RLCGSVAKTLLVLT
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

TrEMBL top hitse value%identityAlignment
A0A0A0KEN4 tRNA-intron lyase1.79e-20398.58Show/hide
Query:  MVVVKTPTVVFFIQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNR
        MVVVKTPTVVFFIQLTLPAAA FFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNT+LHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNR
Subjt:  MVVVKTPTVVFFIQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNR

Query:  TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSE
        TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSE
Subjt:  TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSE

Query:  FAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        FAVLVLCE  DSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
Subjt:  FAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

A0A1S3CK86 tRNA-intron lyase1.08e-17693.41Show/hide
Query:  FFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEE
        F LLS V AVDFTVSPPASMAPRWKGKASEAKALADPIS+TVLHLQSSFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTAEKDKQWFQFGMEE
Subjt:  FFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEE

Query:  AFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSD
        AFYLSYHLNCLKIVDGQDCE NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL E  DSNGNGRLRVWSD
Subjt:  AFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSD

Query:  FLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        FLCT+RLCGSVAKTLLVL+VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  FLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

A0A5A7SVN0 tRNA-intron lyase8.49e-16794.14Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGKASEAKALADPIS+TVLHLQSSFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
        E NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL E  DSNGNGRLRVWSDFLCT+RLCGSVAKTLLVL+
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

A0A6J1FWV5 tRNA-intron lyase2.54e-14684.1Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        M PRWKGKASEA+ALADP+S  VL LQSS   S+AQGLLSG  ILY ADEEQTDLLNR CFGR I+TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
        EKN QELW+ MK++KATFPEFY+AY+HLR+KNW+VRPGSQYGVDFVAYRHHP+LVHSEFAVLVL E   SN N RLRVWSDFLCT+RLCGSVAKTLLVL+
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGSG VSPSCLD+YSIEERTVTRWSPEQCRENP KV
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

A0A6J1JBL2 tRNA-intron lyase1.26e-14676.58Show/hide
Query:  IQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEK
        I L LP   L    L  +     ++     M PRWKGKASEA+ALADP+S  VL LQSS   S+AQGLLSG  ILY ADEEQTDLLNR CFGR I+TA+ 
Subjt:  IQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEK

Query:  DKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDS
        DKQWFQFGMEEAFYLSYHLNCLKIVDGQD EKN QELW+ MK+QKATFPEFY+AY+HLR+KNW+VRPGSQYGVDFVAYRHHP+LVHSEFAVLVL E   S
Subjt:  DKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDS

Query:  NGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        N NGRLRVWSDFLCT+RLCGSVAKTLLVL+VNDNG+G VSPSCLDS+SIEERTVTRWSPEQCRENP KV
Subjt:  NGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

SwissProt top hitse value%identityAlignment
Q5M954 tRNA-splicing endonuclease subunit Sen21.9e-1730.25Show/hide
Query:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNG
        ++ Q  +EEAF+L+Y L CL I   ++      +LW+     + TF   Y+AY + R K WV + G +YG D + YR  P   H+ ++V++  E  D N 
Subjt:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNG

Query:  NGRLR---VWSDFLCTVRLCGSVAKTL----LVLTVNDNGSGFVSPSCLDSYSIEERTVTRW
         G LR    W       R+ G+V+K L    L+           +P C+    ++E  ++RW
Subjt:  NGRLR---VWSDFLCTVRLCGSVAKTL----LVLTVNDNGSGFVSPSCLDSYSIEERTVTRW

Q5Z6B1 Probable tRNA-splicing endonuclease subunit Sen22.2e-5850.21Show/hide
Query:  PRWK----GKASEAKALADPISNTVLHLQSSFIHSNAQGLLS---GSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIV
        PRWK    GK   + A A+P+S  V  L++SFI S    +LS   GS +L +   EQ  +LNR  FG  I  A   K WFQ   EE FYL + LNC+++ 
Subjt:  PRWK----GKASEAKALADPISNTVLHLQSSFIHSNAQGLLS---GSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIV

Query:  DGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATD-SNGNGRLRVWSDFLCTVRLCGSVAK
           + + +  ELW Y ++   +FPE Y AY HLRLKNWVVR G QYG DFVAYRHHP+LVHSEFAV+V+ E  +  N  GRL VWSD LC +R  GSVAK
Subjt:  DGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATD-SNGNGRLRVWSDFLCTVRLCGSVAK

Query:  TLLVLTVNDNGS-GFVSPSCLDSYSIEERTVTRWSPEQCRE
        TLLVLT++ +      SP CL+   + ERT+TRW  +QCRE
Subjt:  TLLVLTVNDNGS-GFVSPSCLDSYSIEERTVTRWSPEQCRE

Q6P7W5 tRNA-splicing endonuclease subunit Sen21.9e-1730.25Show/hide
Query:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNG
        ++ Q  +EEAF+L+Y L CL I   ++      +LW+     + TF   Y+AY + R K WV + G +YG D + YR  P   H+ ++V++  E  D N 
Subjt:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNG

Query:  NGRLR---VWSDFLCTVRLCGSVAKTL----LVLTVNDNGSGFVSPSCLDSYSIEERTVTRW
         G LR    W       R+ G+V+K L    L+           +P C+    ++E  ++RW
Subjt:  NGRLR---VWSDFLCTVRLCGSVAKTL----LVLTVNDNGSGFVSPSCLDSYSIEERTVTRW

Q9LSS3 tRNA-splicing endonuclease subunit Sen2-21.2e-6754.43Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWK K +EAKALA+PIS +V  LQ S   + + G LS   +L   + EQ +LL+R CFGR +L+AEK K+W Q   EEAF+L Y+L C+KI     C
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
         +N  + W YMK+++  FP F+ AY HLR KNWV+R G QYGVDFVAYRHHPSLVHSE++VLV      S  + RLRVWSD  C VRL GSVAKTLL L 
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN
        VN N  G       CL+++++EE+T++RWSPE  RE+
Subjt:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN

Q9M1E8 tRNA-splicing endonuclease subunit Sen2-12.2e-6654.36Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        MAPRWK K +EAKALA+P+S TV  L+SS   + A G LS   +L   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  CEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL
         E N  +LWR M + K  F   Y AY HLR KNW+VR G QYGVDFV YRHHPSLVHSE+AVLV        GN RL+VWSD  C+VRL GSVAK+LLVL
Subjt:  CEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL

Query:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK
         VN   N      P CL+ Y++EE+T+ RWSPE  RE+  +
Subjt:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK

Arabidopsis top hitse value%identityAlignment
AT3G45577.1 tRNA-intron endonucleases8.2e-1648.78Show/hide
Query:  EQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKN
        EQ +LL+R CFGR +  AEKDK+W Q   EEAF+L Y L C+KI        N  +LWR +++ K  F   Y AY HLR KN
Subjt:  EQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKN

AT3G45590.1 splicing endonuclease 11.6e-6754.36Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        MAPRWK K +EAKALA+P+S TV  L+SS   + A G LS   +L   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  CEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL
         E N  +LWR M + K  F   Y AY HLR KNW+VR G QYGVDFV YRHHPSLVHSE+AVLV        GN RL+VWSD  C+VRL GSVAK+LLVL
Subjt:  CEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL

Query:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK
         VN   N      P CL+ Y++EE+T+ RWSPE  RE+  +
Subjt:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK

AT3G45590.2 splicing endonuclease 11.6e-6754.36Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        MAPRWK K +EAKALA+P+S TV  L+SS   + A G LS   +L   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  CEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL
         E N  +LWR M + K  F   Y AY HLR KNW+VR G QYGVDFV YRHHPSLVHSE+AVLV        GN RL+VWSD  C+VRL GSVAK+LLVL
Subjt:  CEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL

Query:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK
         VN   N      P CL+ Y++EE+T+ RWSPE  RE+  +
Subjt:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK

AT5G60230.1 splicing endonuclease 28.4e-6954.43Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWK K +EAKALA+PIS +V  LQ S   + + G LS   +L   + EQ +LL+R CFGR +L+AEK K+W Q   EEAF+L Y+L C+KI     C
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
         +N  + W YMK+++  FP F+ AY HLR KNWV+R G QYGVDFVAYRHHPSLVHSE++VLV      S  + RLRVWSD  C VRL GSVAKTLL L 
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN
        VN N  G       CL+++++EE+T++RWSPE  RE+
Subjt:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN

AT5G60230.2 splicing endonuclease 22.9e-6954.62Show/hide
Query:  SMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD
        SMAPRWK K +EAKALA+PIS +V  LQ S   + + G LS   +L   + EQ +LL+R CFGR +L+AEK K+W Q   EEAF+L Y+L C+KI     
Subjt:  SMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD

Query:  CEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL
        C +N  + W YMK+++  FP F+ AY HLR KNWV+R G QYGVDFVAYRHHPSLVHSE++VLV      S  + RLRVWSD  C VRL GSVAKTLL L
Subjt:  CEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL

Query:  TVNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN
         VN N  G       CL+++++EE+T++RWSPE  RE+
Subjt:  TVNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTAGTTAAAACTCCCACTGTTGTCTTTTTCATTCAACTTACCCTCCCCGCCGCCGCACTCTTCTTTTTTCTTTTATCTGGCGTTGCTGCCGTCGATTTCACTGT
TTCACCGCCGGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCATTTCCAATACTGTACTTCACCTTCAATCTTCTTTCATAC
ACTCCAACGCTCAAGGGTTATTATCTGGTTCTATCATACTTTATCTAGCCGACGAAGAACAAACCGATCTTCTTAATCGCACTTGTTTCGGCCGACCAATTCTTACTGCT
GAGAAGGACAAACAATGGTTTCAATTTGGCATGGAGGAGGCTTTTTACTTGTCCTATCACTTGAATTGCCTCAAAATTGTCGATGGACAAGATTGTGAAAAGAATTTTCA
AGAGCTTTGGCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCGACATCTTCGATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATG
GGGTTGATTTTGTGGCGTATCGTCATCATCCGTCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTGTGAAGCAACAGACAGTAATGGAAATGGGCGATTGAGGGTT
TGGTCTGATTTTCTTTGCACAGTTCGGCTTTGTGGAAGTGTTGCTAAAACGTTGCTAGTTCTTACCGTCAATGATAATGGAAGTGGATTTGTTTCTCCTTCGTGTTTGGA
CAGTTACTCCATTGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTAGTTAAAACTCCCACTGTTGTCTTTTTCATTCAACTTACCCTCCCCGCCGCCGCACTCTTCTTTTTTCTTTTATCTGGCGTTGCTGCCGTCGATTTCACTGT
TTCACCGCCGGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCATTTCCAATACTGTACTTCACCTTCAATCTTCTTTCATAC
ACTCCAACGCTCAAGGGTTATTATCTGGTTCTATCATACTTTATCTAGCCGACGAAGAACAAACCGATCTTCTTAATCGCACTTGTTTCGGCCGACCAATTCTTACTGCT
GAGAAGGACAAACAATGGTTTCAATTTGGCATGGAGGAGGCTTTTTACTTGTCCTATCACTTGAATTGCCTCAAAATTGTCGATGGACAAGATTGTGAAAAGAATTTTCA
AGAGCTTTGGCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCGACATCTTCGATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATG
GGGTTGATTTTGTGGCGTATCGTCATCATCCGTCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTGTGAAGCAACAGACAGTAATGGAAATGGGCGATTGAGGGTT
TGGTCTGATTTTCTTTGCACAGTTCGGCTTTGTGGAAGTGTTGCTAAAACGTTGCTAGTTCTTACCGTCAATGATAATGGAAGTGGATTTGTTTCTCCTTCGTGTTTGGA
CAGTTACTCCATTGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTGTGA
Protein sequenceShow/hide protein sequence
MVVVKTPTVVFFIQLTLPAAALFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTA
EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEATDSNGNGRLRV
WSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV