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Cucsat.G5468 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G5468
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionSWIM-type domain-containing protein
Genome locationctg1269:867587..869954
RNA-Seq ExpressionCucsat.G5468
SyntenyCucsat.G5468
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010073 - meristem maintenance (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR004332 - Transposase, MuDR, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044308.1 uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa]2.86e-7279.31Show/hide
Query:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN
        R+  VDTSCLIQKGM+FD KEDL LA K+YCVTQH EIVV +SNQ++W+VRCKQWSNGCNWRLR ++RKSH LFEI++L+GEHSCLYSNLTQDHSQLDSN
Subjt:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN

Query:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA
        F S+QIQNIV+ DPSVTVSVL+E+IKQQYGY VKY RVWQAK+KA
Subjt:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA

XP_008451648.1 PREDICTED: uncharacterized protein LOC103492881 [Cucumis melo]8.53e-7377.93Show/hide
Query:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN
        R+  VDTSCLIQKGM+FD KEDL LA K+YCVTQH EIVV +SNQ++W+VRCKQWSN CNWRLR ++RKSH LFEI++L+GEHSCLYSNLTQDHSQLDSN
Subjt:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN

Query:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA
        F S++IQNIV+ DPSVTVSVL+E+IKQQYGY VKY RVWQAK+KA
Subjt:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA

XP_031737534.1 uncharacterized protein LOC116402427 [Cucumis sativus]1.80e-8187.59Show/hide
Query:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN
        RNVSVDTSCLIQKGMIFD KEDL+LA KRYCVTQH EIVV +SNQHLWN+RCKQW+NGCNWRLR TKRKSH LFEITKLQGEHSCLYSNLTQDHSQLDSN
Subjt:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN

Query:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA
        F SVQIQN+VK DP++TVSVL+EIIKQQYGY VKYG+VWQAKKKA
Subjt:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA

XP_031741740.1 uncharacterized protein LOC116403936 [Cucumis sativus]1.98e-8286.9Show/hide
Query:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN
        RNV VDTSCLI+KGMIFD KEDLLLA KRYCVTQH EIVV +SNQHLWN+RCKQWSNGC WRLRATKRKSH LFEITKLQ EHSCLYSNLTQDHSQL SN
Subjt:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN

Query:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA
        F SVQIQN++K DP++TVSVLVEIIKQQYGYNVKYGRVWQ KKKA
Subjt:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA

XP_031742190.1 uncharacterized protein LOC116404107 [Cucumis sativus]2.66e-8589.66Show/hide
Query:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN
        RNVSVDTSCLIQKGMIFD KEDL+LA KRYCVTQH EIVV  SNQHLWN+RCKQWSNGCNWRLRATKRKSH LFEITKLQGEHSCLYSNLTQDHSQLDSN
Subjt:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN

Query:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA
        F SVQIQN+VK DP++TV VLVEIIKQQYGY+VKYGRVWQAKKKA
Subjt:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA

TrEMBL top hitse value%identityAlignment
A0A1S3BS22 uncharacterized protein LOC1034928814.13e-7377.93Show/hide
Query:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN
        R+  VDTSCLIQKGM+FD KEDL LA K+YCVTQH EIVV +SNQ++W+VRCKQWSN CNWRLR ++RKSH LFEI++L+GEHSCLYSNLTQDHSQLDSN
Subjt:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN

Query:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA
        F S++IQNIV+ DPSVTVSVL+E+IKQQYGY VKY RVWQAK+KA
Subjt:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA

A0A5A7SLM1 Uncharacterized protein1.01e-6675.86Show/hide
Query:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN
        R+  VDT CLIQKGM+FD KEDL LA K+YCVTQH +IVV +SNQ++W+VRCKQWSNGCNWRLR ++RKSH LFEI++L+GEHSCLYSNLTQDHSQLDSN
Subjt:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN

Query:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA
        F S++IQNIV+ D SVT+SVL+E+IKQQYGY VKY RVWQAK+KA
Subjt:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA

A0A5A7TN56 SWIM-type domain-containing protein1.38e-7279.31Show/hide
Query:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN
        R+  VDTSCLIQKGM+FD KEDL LA K+YCVTQH EIVV +SNQ++W+VRCKQWSNGCNWRLR ++RKSH LFEI++L+GEHSCLYSNLTQDHSQLDSN
Subjt:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN

Query:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA
        F S+QIQNIV+ DPSVTVSVL+E+IKQQYGY VKY RVWQAK+KA
Subjt:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA

A0A5D3BS92 SWIM-type domain-containing protein3.81e-7278.62Show/hide
Query:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN
        R+  VDTSCLIQKGM+FD KEDL LA K+YCVTQH EIVV +SNQ++W+VRCKQWSNGCNWRLR ++RKSH LFEI++L+GEHSCLYSNLTQDHSQLDSN
Subjt:  RNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSN

Query:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA
        F S++IQNIV+ DPSVTVSVL+E+IKQQYGY VKY RVWQAK+KA
Subjt:  FTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA

A0A5D3C124 Uncharacterized protein7.20e-6877.1Show/hide
Query:  MIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSNFTSVQIQNIVKVDP
        M+FD KEDL LA K+YCVTQH EIVV +SNQ++W+VRCKQWSNGCNWRLR ++RKSH LFEI++L+GEHSCLYSNLTQDHSQLDSNF S++IQNI++ DP
Subjt:  MIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSNFTSVQIQNIVKVDP

Query:  SVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA
        SVTVSVL E+IKQQYGY VKY RVWQ K+KA
Subjt:  SVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64255.1 MuDR family transposase5.0e-0728.75Show/hide
Query:  LLKSSIVSIVSSDLTRNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSC
        L K SI   VS     ++ +D   L + G+ F   ++L  A     +    + VV ++ +  +   C +W   C W L A + K H L EI K  G H+C
Subjt:  LLKSSIVSIVSSDLTRNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSC

Query:  LYSNLTQDHSQLDSNFTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA
         +  + +D     S F + +I+  V+  P+ T+S L +  K++ GY ++   V  AK+KA
Subjt:  LYSNLTQDHSQLDSNFTSVQIQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCATCTTTCCTCTTTCGTTCTCCCTCCTTCCAATTTCTTATTTCTTCTTCCTCTCTTCATCTTTCCTCCTCCTCTTTCATTCTCCCTCCTTCCAATTTCTTATTTCCTC
TTCCTCTCTTCATTTTTCCTCTTCCTATTTTGTTCTCCCTCCCAATTTCAAATTCTCCCTTCCTCTCTTCACCTTTCCTTTTCCTCTCTCGTTCTCCCTCCTTCCAATTT
CTAATTTCCTCTTCCTCTCTTCATCTTTCCTCTTCCTCTTTTGTTCTTCCTTTTTTCGATTTAATATTTTCATCATAAGGCTTCTTAAATCCTCCATTGTCTCCATTGTT
TCTTCCGATCTCACAAGAAATGTATCTGTAGACACATCTTGTTTAATTCAGAAGGGAATGATCTTTGACTATAAGGAAGATCTTCTGTTGGCTGGTAAGAGGTACTGTGT
GACACAACACAATGAAATTGTTGTAGCCGATTCAAACCAACATTTGTGGAATGTTCGATGCAAACAGTGGAGTAATGGCTGCAACTGGAGGTTACGTGCTACTAAGCGTA
AGAGCCACAGATTGTTTGAAATCACTAAGCTCCAAGGAGAGCACTCGTGTCTATACTCAAATTTAACACAAGATCACTCACAACTAGATTCTAATTTCACAAGTGTTCAA
ATTCAAAATATAGTGAAAGTTGATCCTAGTGTTACTGTGTCTGTGCTTGTGGAAATCATAAAACAACAATATGGTTACAATGTTAAGTATGGACGAGTTTGGCAAGCGAA
GAAAAAAGCTGATCTTTAG
mRNA sequenceShow/hide mRNA sequence
TTCATCTTTCCTCTTTCGTTCTCCCTCCTTCCAATTTCTTATTTCTTCTTCCTCTCTTCATCTTTCCTCCTCCTCTTTCATTCTCCCTCCTTCCAATTTCTTATTTCCTC
TTCCTCTCTTCATTTTTCCTCTTCCTATTTTGTTCTCCCTCCCAATTTCAAATTCTCCCTTCCTCTCTTCACCTTTCCTTTTCCTCTCTCGTTCTCCCTCCTTCCAATTT
CTAATTTCCTCTTCCTCTCTTCATCTTTCCTCTTCCTCTTTTGTTCTTCCTTTTTTCGATTTAATATTTTCATCATAAGGCTTCTTAAATCCTCCATTGTCTCCATTGTT
TCTTCCGATCTCACAAGAAATGTATCTGTAGACACATCTTGTTTAATTCAGAAGGGAATGATCTTTGACTATAAGGAAGATCTTCTGTTGGCTGGTAAGAGGTACTGTGT
GACACAACACAATGAAATTGTTGTAGCCGATTCAAACCAACATTTGTGGAATGTTCGATGCAAACAGTGGAGTAATGGCTGCAACTGGAGGTTACGTGCTACTAAGCGTA
AGAGCCACAGATTGTTTGAAATCACTAAGCTCCAAGGAGAGCACTCGTGTCTATACTCAAATTTAACACAAGATCACTCACAACTAGATTCTAATTTCACAAGTGTTCAA
ATTCAAAATATAGTGAAAGTTGATCCTAGTGTTACTGTGTCTGTGCTTGTGGAAATCATAAAACAACAATATGGTTACAATGTTAAGTATGGACGAGTTTGGCAAGCGAA
GAAAAAAGCTGATCTTTAG
Protein sequenceShow/hide protein sequence
FIFPLSFSLLPISYFFFLSSSFLLLFHSPSFQFLISSSSLHFSSSYFVLPPNFKFSLPLFTFPFPLSFSLLPISNFLFLSSSFLFLFCSSFFRFNIFIIRLLKSSIVSIV
SSDLTRNVSVDTSCLIQKGMIFDYKEDLLLAGKRYCVTQHNEIVVADSNQHLWNVRCKQWSNGCNWRLRATKRKSHRLFEITKLQGEHSCLYSNLTQDHSQLDSNFTSVQ
IQNIVKVDPSVTVSVLVEIIKQQYGYNVKYGRVWQAKKKADL