CuGenDBv2

Gene ID	Cucsat.G547
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	E3 ubiquitin-protein ligase RBBP6 isoform X2
Genome location	ctg1:10695362..10707736
RNA-Seq Expression	Cucsat.G547
Synteny	Cucsat.G547
Gene Ontology terms	GO:0016020 - membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016853 - isomerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004134201.1 uncharacterized protein LOC101221899 isoform X2 [Cucumis sativus]

1.88e-83

99.26

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Query:  MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP
        MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP
Subjt:  MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP

Query:  EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQKV
        EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQK+
Subjt:  EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQKV

XP_008438870.1 PREDICTED: uncharacterized protein LOC103483832 [Cucumis melo]

4.27e-82

97.79

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Query:  MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP
        MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKL+QDPNA SSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP
Subjt:  MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP

Query:  EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQKV
        EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQK+
Subjt:  EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQKV

XP_022956118.1 uncharacterized protein LOC111457905 isoform X1 [Cucurbita moschata]

3.72e-68

88.24

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Query:  VMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDP
        +MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKL+QDPN LSSINPQIL+LAVRNAKASV  SSGTNIRHVDTFDDP
Subjt:  VMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDP

Query:  EASFDEGESMNSEPKKQKKKNKK-KKNKNKKNKRQK
        EASFD+GE+MNSEPKKQK KNKK KKNKNKK K+ K
Subjt:  EASFDEGESMNSEPKKQKKKNKK-KKNKNKKNKRQK

XP_022956119.1 uncharacterized protein LOC111457905 isoform X2 [Cucurbita moschata]

1.26e-68

87.86

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Query:  VMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDP
        +MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKL+QDPN LSSINPQIL+LAVRNAKASV  SSGTNIRHVDTFDDP
Subjt:  VMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDP

Query:  EASFDEGESMNSEPKKQKKKNKK-KKNKNKK---NKRQKV
        EASFD+GE+MNSEPKKQK KNKK KKNKNKK   NKRQK+
Subjt:  EASFDEGESMNSEPKKQKKKNKK-KKNKNKK---NKRQKV

XP_031739377.1 uncharacterized protein LOC101221899 isoform X1 [Cucumis sativus]

1.87e-116

100

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Query:  MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP
        MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP
Subjt:  MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP

Query:  EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQKVEIPLLQALYNLMSVASIFPYVEIAHCRLLRTPSVALGENPKRS
        EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQKVEIPLLQALYNLMSVASIFPYVEIAHCRLLRTPSVALGENPKRS
Subjt:  EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQKVEIPLLQALYNLMSVASIFPYVEIAHCRLLRTPSVALGENPKRS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LAK0 Uncharacterized protein

9.11e-84

99.26

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Query:  MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP
        MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP
Subjt:  MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP

Query:  EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQKV
        EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQK+
Subjt:  EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQKV

A0A1S3AY37 uncharacterized protein LOC103483832

2.07e-82

97.79

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Query:  MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP
        MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKL+QDPNA SSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP
Subjt:  MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDP

Query:  EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQKV
        EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQK+
Subjt:  EASFDEGESMNSEPKKQKKKNKKKKNKNKKNKRQKV

A0A6J1GVW4 uncharacterized protein LOC111457905 isoform X1

1.80e-68

88.24

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Query:  VMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDP
        +MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKL+QDPN LSSINPQIL+LAVRNAKASV  SSGTNIRHVDTFDDP
Subjt:  VMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDP

Query:  EASFDEGESMNSEPKKQKKKNKK-KKNKNKKNKRQK
        EASFD+GE+MNSEPKKQK KNKK KKNKNKK K+ K
Subjt:  EASFDEGESMNSEPKKQKKKNKK-KKNKNKKNKRQK

A0A6J1GY51 uncharacterized protein LOC111457905 isoform X2

6.10e-69

87.86

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Query:  VMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDP
        +MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKL+QDPN LSSINPQIL+LAVRNAKASV  SSGTNIRHVDTFDDP
Subjt:  VMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDP

Query:  EASFDEGESMNSEPKKQKKKNKK-KKNKNKK---NKRQKV
        EASFD+GE+MNSEPKKQK KNKK KKNKNKK   NKRQK+
Subjt:  EASFDEGESMNSEPKKQKKKNKK-KKNKNKK---NKRQKV

A0A6J1IUT6 uncharacterized protein LOC111479494

3.18e-68

89.05

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Query:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDPE
        MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKL+QDPN LSSINPQIL+LAVRNAKASV  SSGTNIRHVDTFDDPE
Subjt:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-HSSGTNIRHVDTFDDPE

Query:  ASFDEGESMNSEPKKQKKKNKK-KKNKN-KKNKRQKV
        ASFD+GE+MNSEPKKQK KNKK KKNK  KKNKRQK+
Subjt:  ASFDEGESMNSEPKKQKKKNKK-KKNKN-KKNKRQKV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G18540.1 unknown protein

2.6e-31

61.87

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Query:  EDLTEEERRALRGSKFAPLPSQSTSSRSH-PRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-----HSSGTNIRHVDTF
        E+LTE+E+RALRGSKFAPL S  +SSRS  PRLAHPGGPLKTNKAAALAKFL RKL QDPN L+SI+P +++LAV+NAK +V      SSG  I+HV +F
Subjt:  EDLTEEERRALRGSKFAPLPSQSTSSRSH-PRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-----HSSGTNIRHVDTF

Query:  DDPEASFDEGESMNSE-PKKQKKKNKKKKNKNKKNKRQK
        +D E S D+ +  N++  KK+KKKN KKK + KK K+ K
Subjt:  DDPEASFDEGESMNSE-PKKQKKKNKKKKNKNKKNKRQK

AT5G18540.2 unknown protein

1.5e-31

58.62

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Query:  EDLTEEERRALRGSKFAPLPSQSTSSRSH-PRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-----HSSGTNIRHVDTF
        E+LTE+E+RALRGSKFAPL S  +SSRS  PRLAHPGGPLKTNKAAALAKFL RKL QDPN L+SI+P +++LAV+NAK +V      SSG  I+HV +F
Subjt:  EDLTEEERRALRGSKFAPLPSQSTSSRSH-PRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASV-----HSSGTNIRHVDTF

Query:  DDPEASFD----EGESMNSEPKKQKKKNKKKKNKNKKNKRQKVEI
        +D E S D    E   +N + KK+  K KK++ K KKNK+ K+ +
Subjt:  DDPEASFD----EGESMNSEPKKQKKKNKKKKNKNKKNKRQKVEI

Sequences

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CDS sequence

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ATGGTGATGGAAGATCTTACCGAAGAAGAAAGACGAGCTTTACGCGGAAGCAAGTTCGCTCCTCTCCCATCGCAATCCACTTCTTCTCGATCTCACCCAAGGTTGGCTCA
TCCAGGTGGACCATTGAAAACCAACAAAGCCGCGGCTCTCGCTAAGTTTCTTCACCGGAAATTGAACCAAGATCCTAATGCTCTCTCTTCTATTAATCCTCAGATTTTGG
ACCTTGCTGTTCGTAATGCCAAAGCCTCTGTTCATTCCAGTGGTACAAATATCCGGCATGTGGACACATTTGATGACCCTGAGGCTTCTTTTGATGAAGGGGAATCTATG
AATTCTGAGCCTAAGAAACAAAAGAAGAAGAACAAGAAGAAGAAAAATAAGAATAAGAAGAATAAAAGGCAAAAGGTTGAAATCCCCCTTCTTCAAGCTCTATATAATCT
GATGAGTGTTGCCTCCATTTTTCCTTATGTTGAGATTGCACACTGCAGATTGTTGAGGACTCCGAGTGTGGCGTTGGGGGAAAACCCAAAAAGAAGTTGA

mRNA sequence

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Protein sequence

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MVMEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLHRKLNQDPNALSSINPQILDLAVRNAKASVHSSGTNIRHVDTFDDPEASFDEGESM
NSEPKKQKKKNKKKKNKNKKNKRQKVEIPLLQALYNLMSVASIFPYVEIAHCRLLRTPSVALGENPKRS

Cucsat.G547 (gene) of Cucumber (B10) v3 genome