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Cucsat.G550 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G550
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionTranscription termination factor MTEF1
Genome locationctg1:10726919..10728569
RNA-Seq ExpressionCucsat.G550
SyntenyCucsat.G550
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650387.1 hypothetical protein Csa_010240 [Cucumis sativus]1.08e-77100Show/hide
Query:  AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTK
        AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTK
Subjt:  AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTK

Query:  STWDKKVEVYRKWGLSEEEIRV
        STWDKKVEVYRKWGLSEEEIRV
Subjt:  STWDKKVEVYRKWGLSEEEIRV

XP_011651043.2 uncharacterized protein LOC101221507 isoform X1 [Cucumis sativus]8.63e-6587.6Show/hide
Query:  AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTK
        AF+YLQAVLGSEEKTLATIK    IL  DLR  +GPNIEILKQIGVPDSNILKYLQYQPRVF+TNSIQFKETVERVKE+GFNTQQ  FVDAVFCLRSMTK
Subjt:  AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTK

Query:  STWDKKVEVYRKWGLSEEEIR
        STWDKKVE YRKWGLSEEEIR
Subjt:  STWDKKVEVYRKWGLSEEEIR

XP_011651044.1 uncharacterized protein LOC101221507 isoform X2 [Cucumis sativus]2.78e-7588.06Show/hide
Query:  MDSLNHKSLTLPTAFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLH
        MDSLNHKSLTLP AF+YLQAVLGSEEKTLATIK    IL  DLR  +GPNIEILKQIGVPDSNILKYLQYQPRVF+TNSIQFKETVERVKE+GFNTQQ  
Subjt:  MDSLNHKSLTLPTAFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLH

Query:  FVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEIR
        FVDAVFCLRSMTKSTWDKKVE YRKWGLSEEEIR
Subjt:  FVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEIR

XP_016899007.1 PREDICTED: uncharacterized protein LOC107990329 [Cucumis melo]1.45e-6275.35Show/hide
Query:  MDSLNHKSLTLPT---------AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKE
        MDSLNHKSL L           AF+Y+QAVLGSEEKTLA IK+  SIL+ DLRI +GPNIEILKQIGVPDSNILKY QYQPRVF  NSI+FKETVERV E
Subjt:  MDSLNHKSLTLPT---------AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKE

Query:  IGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEI
        +GFN Q+L F+ AVF LR+MTKSTWDKKVEVYRKWGLSEEEI
Subjt:  IGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEI

XP_031738133.1 uncharacterized protein LOC105434842 [Cucumis sativus]3.52e-101100Show/hide
Query:  MLFSSITKGRLQLIYLRIMDSLNHKSLTLPTAFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQF
        MLFSSITKGRLQLIYLRIMDSLNHKSLTLPTAFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQF
Subjt:  MLFSSITKGRLQLIYLRIMDSLNHKSLTLPTAFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQF

Query:  KETVERVKEIGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEIRV
        KETVERVKEIGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEIRV
Subjt:  KETVERVKEIGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEIRV

TrEMBL top hitse value%identityAlignment
A0A1S4DSL1 uncharacterized protein LOC1034838261.73e-5880.17Show/hide
Query:  FNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTKS
        F+YLQAV GSEEKTL TIK    IL+ DLRI +GPNIEILKQIGVPDSNI KYLQYQPRVFL N ++FKE VERVKE+GFN QQL FV AVF LR+MTKS
Subjt:  FNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTKS

Query:  TWDKKVEVYRKWGLSEEEIRV
        TWDKKVEVYRKWGLSEEEIR+
Subjt:  TWDKKVEVYRKWGLSEEEIRV

A0A1S4DSN7 uncharacterized protein LOC1079903297.03e-6375.35Show/hide
Query:  MDSLNHKSLTLPT---------AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKE
        MDSLNHKSL L           AF+Y+QAVLGSEEKTLA IK+  SIL+ DLRI +GPNIEILKQIGVPDSNILKY QYQPRVF  NSI+FKETVERV E
Subjt:  MDSLNHKSLTLPT---------AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKE

Query:  IGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEI
        +GFN Q+L F+ AVF LR+MTKSTWDKKVEVYRKWGLSEEEI
Subjt:  IGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEI

A0A1S4DSP1 uncharacterized protein LOC1079903983.36e-5881.97Show/hide
Query:  AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTK
        AF+Y+QAVLGSE K LATIKH  SIL +DL I +GPNIEILKQIGVPDSNILKYLQYQPRVFL NSI+FKE VERV E+GFN QQL FV AVF LR+MTK
Subjt:  AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTK

Query:  STWDKKVEVYRKWGLSEEEIRV
        STWDKKVEVYRKWGLSEEEIR+
Subjt:  STWDKKVEVYRKWGLSEEEIRV

A0A1S4DSR4 uncharacterized protein LOC103483819 isoform X33.45e-5880Show/hide
Query:  AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTK
        AF+Y+QAVLGSEEKTL  IK+   IL++DLRI +GPNIEILKQIGVPDSNI KYLQY+PRVFLTN I+FKETV+RV E+GFN QQL FV AVF LRS+TK
Subjt:  AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTK

Query:  STWDKKVEVYRKWGLSEEEI
        STWDKKVEVYRKWGLSEEEI
Subjt:  STWDKKVEVYRKWGLSEEEI

A0A5A7U5J6 Transcription termination factor MTEF13.45e-5880Show/hide
Query:  AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTK
        AF+Y+QAVLGSEEKTL  IK+   IL++DLRI +GPNIEILKQIGVPDSNI KYLQY+PRVFLTN I+FKETV+RV E+GFN QQL FV AVF LRS+TK
Subjt:  AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTK

Query:  STWDKKVEVYRKWGLSEEEI
        STWDKKVEVYRKWGLSEEEI
Subjt:  STWDKKVEVYRKWGLSEEEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G61970.1 Mitochondrial transcription termination factor family protein6.1e-0522.79Show/hide
Query:  IMDSLNHKSLTLPTAFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYL--QYQPRVFLTNSIQFKETVERVKEIGFNTQ
        I+    HK  T+   +++++  L  +      + HS+   + + +I    N+ +L+++G+P   +   L    QP   +    +F+ET+++V E+GF+  
Subjt:  IMDSLNHKSLTLPTAFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYL--QYQPRVFLTNSIQFKETVERVKEIGFNTQ

Query:  QLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEI
           FV+A+  +  M + T ++KV +Y+  G    ++
Subjt:  QLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEI

AT1G62010.1 Mitochondrial transcription termination factor family protein1.2e-0531.4Show/hide
Query:  NIEILKQIGVPDSNILKYL--QYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEI
        NI +L+++GVP   +L  L  + QP   +    +F  ++++V E+GF+     FV A+  L  M+  T ++K+ VYR  G S +++
Subjt:  NIEILKQIGVPDSNILKYL--QYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEI

AT3G46950.1 Mitochondrial transcription termination factor family protein1.2e-0833.72Show/hide
Query:  NIEILKQIGVPDSNILKYL--QYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEI
        NI +L+++GVP   +   L  +YQP   +    +F+E++++V ++GF+  +  FV+A+  +  M++ T ++KV VY++ G SE EI
Subjt:  NIEILKQIGVPDSNILKYL--QYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEI

AT5G07900.1 Mitochondrial transcription termination factor family protein2.6e-1634.71Show/hide
Query:  AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSM-T
        ++N+L++VL S+EK +A ++ +  +  +D    L PNI  + + GVP+  I   L + P   +  + +F+   ++ +E+GFN Q+  FV A+  L     
Subjt:  AFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSM-T

Query:  KSTWDKKVEVYRKWGLSEEEI
        KS WDK  EVY++WG SE++I
Subjt:  KSTWDKKVEVYRKWGLSEEEI

AT5G64950.1 Mitochondrial transcription termination factor family protein1.3e-1034.38Show/hide
Query:  ILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEI
        +LS+D  + L PNI  L+  G+  S +   L+ QPR+F  +  + +  V R  ++GF       V AV  L S+++ T+D+KV+++   G SE+EI
Subjt:  ILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGTTCAGCTCAATAACAAAGGGAAGGCTGCAATTGATTTACTTGCGAATCATGGATTCTCTGAATCACAAATCTCTTACCTTGCCAACAGCCTTTAATTACCTTCA
AGCCGTGCTTGGAAGTGAGGAGAAGACTCTGGCTACCATAAAACATTCTGTGAGTATTCTCTCTAAGGATCTTCGAATTTGTCTTGGTCCCAATATTGAAATTCTGAAAC
AAATTGGAGTGCCGGATTCAAATATTTTAAAATATCTTCAGTACCAGCCTAGAGTGTTCTTGACAAATTCCATCCAATTCAAGGAGACTGTAGAGAGAGTTAAGGAAATT
GGATTCAACACTCAACAATTGCATTTTGTTGATGCTGTTTTTTGTCTGCGATCAATGACCAAATCTACATGGGATAAGAAGGTTGAAGTTTATAGGAAATGGGGATTATC
TGAAGAAGAGATCCGTGTA
mRNA sequenceShow/hide mRNA sequence
ATGCTGTTCAGCTCAATAACAAAGGGAAGGCTGCAATTGATTTACTTGCGAATCATGGATTCTCTGAATCACAAATCTCTTACCTTGCCAACAGCCTTTAATTACCTTCA
AGCCGTGCTTGGAAGTGAGGAGAAGACTCTGGCTACCATAAAACATTCTGTGAGTATTCTCTCTAAGGATCTTCGAATTTGTCTTGGTCCCAATATTGAAATTCTGAAAC
AAATTGGAGTGCCGGATTCAAATATTTTAAAATATCTTCAGTACCAGCCTAGAGTGTTCTTGACAAATTCCATCCAATTCAAGGAGACTGTAGAGAGAGTTAAGGAAATT
GGATTCAACACTCAACAATTGCATTTTGTTGATGCTGTTTTTTGTCTGCGATCAATGACCAAATCTACATGGGATAAGAAGGTTGAAGTTTATAGGAAATGGGGATTATC
TGAAGAAGAGATCCGTGTA
Protein sequenceShow/hide protein sequence
MLFSSITKGRLQLIYLRIMDSLNHKSLTLPTAFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILKYLQYQPRVFLTNSIQFKETVERVKEI
GFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKWGLSEEEIRV