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Cucsat.G555 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G555
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description40S ribosomal protein S21
Genome locationctg1:10805955..10808043
RNA-Seq ExpressionCucsat.G555
SyntenyCucsat.G555
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR018279 - Ribosomal protein S21e, conserved site
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69048.1 Ribosomal protein S21e, partial [Prunus dulcis]9.21e-3772.73Show/hide
Query:  SLIKMQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ--------KAWFKNDALNLVMID
        SL KMQNEEG ITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG++RAQ        + W K   LN  +++
Subjt:  SLIKMQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ--------KAWFKNDALNLVMID

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]2.11e-36100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]2.11e-36100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

XP_022950628.1 40S ribosomal protein S21-2-like [Cucurbita moschata]2.11e-36100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

XP_022973757.1 40S ribosomal protein S21-2-like [Cucurbita maxima]6.05e-3698.36Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

TrEMBL top hitse value%identityAlignment
A0A0A0KHD3 40S ribosomal protein S211.02e-36100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A0A0L7W3 40S ribosomal protein S211.02e-36100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A1S4DSM1 40S ribosomal protein S211.02e-36100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A5D3CXC9 40S ribosomal protein S211.02e-36100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A5H2XLV9 Ribosomal protein S21e (Fragment)4.46e-3772.73Show/hide
Query:  SLIKMQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ--------KAWFKNDALNLVMID
        SL KMQNEEG ITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG++RAQ        + W K   LN  +++
Subjt:  SLIKMQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ--------KAWFKNDALNLVMID

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S211.1e-2378.69Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q3E902 40S ribosomal protein S21-23.7e-2788.52Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q41852 40S ribosomal protein S212.5e-2378.69Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q9M337 40S ribosomal protein S21-11.5e-2581.97Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q9SMI2 40S ribosomal protein S213.9e-2172.13Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRA
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRA

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e1.1e-2681.97Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

AT3G53890.2 Ribosomal protein S21e1.1e-2681.97Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

AT5G27700.1 Ribosomal protein S21e2.6e-2888.52Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCCTCTTTCTCCCTTTCGGATAGTTCGTTTCCTCTGTTGTGCTTGCGGTTTCATTCACTTATCAAGATGCAGAACGAAGAGGGTAAAATCACAGAGCTTTATATTCCCAG
AAAATGCTCCGCAACGAATCGCCTGATTACTTCCAAGGACCATGCTTCTGTTCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACACTGGGCAATTTTCTACTT
TTGCTCTCTGTGGTTTCATTCGGGCCCAGAAAGCGTGGTTTAAGAACGATGCATTGAACTTGGTTATGATTGATTCCGTCGGTATTTGA
mRNA sequenceShow/hide mRNA sequence
GCCTCTTTCTCCCTTTCGGATAGTTCGTTTCCTCTGTTGTGCTTGCGGTTTCATTCACTTATCAAGATGCAGAACGAAGAGGGTAAAATCACAGAGCTTTATATTCCCAG
AAAATGCTCCGCAACGAATCGCCTGATTACTTCCAAGGACCATGCTTCTGTTCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACACTGGGCAATTTTCTACTT
TTGCTCTCTGTGGTTTCATTCGGGCCCAGAAAGCGTGGTTTAAGAACGATGCATTGAACTTGGTTATGATTGATTCCGTCGGTATTTGA
Protein sequenceShow/hide protein sequence
ASFSLSDSSFPLLCLRFHSLIKMQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQKAWFKNDALNLVMIDSVGI