CuGenDBv2

Gene ID	Cucsat.G5558
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Rab5-interacting
Genome location	ctg1296:325247..328489
RNA-Seq Expression	Cucsat.G5558
Synteny	Cucsat.G5558
Gene Ontology terms	GO:0006996 - organelle organization (biological process) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004143124.1 uncharacterized protein RAB5IF homolog [Cucumis sativus]

3.93e-87

100

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Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

XP_008464121.1 PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo]

5.59e-87

99.22

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Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAV+LGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

XP_022947918.1 uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita moschata]

1.54e-84

96.12

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Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQ+HQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAV+LGLLWG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

XP_022986965.1 uncharacterized protein C20orf24 homolog [Cucurbita maxima]

1.08e-84

95.35

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Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKE+KP+K NLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAV+LGLLWGSIPLVGGIWFLIFLAISTS+VYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

XP_038900616.1 respirasome Complex Assembly Factor 1-like [Benincasa hispida]

6.53e-86

97.67

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Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKE+KPVKFNLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAV+LGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KFE5 Uncharacterized protein

1.90e-87

100

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Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

A0A1S4E4J0 uncharacterized protein C20orf24 homolog

2.70e-87

99.22

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Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAV+LGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

A0A5D3DK85 Rab5-interacting

2.70e-87

99.22

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Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAV+LGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

A0A6J1G7Y2 uncharacterized protein C20orf24 homolog isoform X2

7.46e-85

96.12

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Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQ+HQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAV+LGLLWG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

A0A6J1JFH8 uncharacterized protein C20orf24 homolog

5.25e-85

95.35

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Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKE+KP+K NLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAV+LGLLWGSIPLVGGIWFLIFLAISTS+VYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

SwissProt top hits

e value

%identity

Alignment

Q9BUV8 Respirasome Complex Assembly Factor 1

2.4e-15

37.84

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Query:  NGHLAPFKLAKLIDPEASW-DKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL
        NG L     +K++  +A+W DKD+  DV++W RQ +AV+LG++WG +PL G +    F  I+  V+Y Y++  L++DEEE+GG   L +EG   S  LF+
Subjt:  NGHLAPFKLAKLIDPEASW-DKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL

Query:  LAWILVYSLAH
        +     ++  H
Subjt:  LAWILVYSLAH

Q9CQT9 Respirasome Complex Assembly Factor 1

2.3e-18

39.29

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Query:  NGHLAPFKLAKLIDPEASW-DKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL
        NG L     +K++  +A+W DKD+  DV++W RQ +A++LG++WG +PL G +    F  I+  V+Y Y++  L++DEEE+GG   L +EG   S  LF+
Subjt:  NGHLAPFKLAKLIDPEASW-DKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL

Query:  LAWILVYSLAHF
        + WI+ Y+  H+
Subjt:  LAWILVYSLAHF

Arabidopsis top hits

e value

%identity

Alignment

AT2G29020.1 Rab5-interacting family protein

1.3e-48

69.17

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Query:  MKEAKPVKFNLHQHQD----HQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEE
        MKE K  K +  Q Q     HQN HL  F  AKL D EASWDKDQLGDVLHWIRQ V ++ GLLWG+IPLVGGIW L+FLAIS+ +VYGYYA++LK+DEE
Subjt:  MKEAKPVKFNLHQHQD----HQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEE

Query:  EFGGHGALLQEGLFASITLFLLAWILVYSLAHF
        +FGGH ALLQ+GLFAS++LFLLAWILVYSL+ F
Subjt:  EFGGHGALLQEGLFASITLFLLAWILVYSLAHF

AT5G59410.1 Rab5-interacting family protein

1.9e-55

79.23

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Query:  MKEAKPVKFN-LHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFG
        MKE+K  K N L Q ++HQN HL+P KLAKL DP+ASWDKDQLGDVLHWIRQ V +I GLLWGSIPLVGGIW ++FLAIS+ +VYGYYAMILKVDEE+FG
Subjt:  MKEAKPVKFN-LHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFG

Query:  GHGALLQEGLFASITLFLLAWILVYSLAHF
        GH ALLQEGLFAS+TLFLLAWILVYSLAHF
Subjt:  GHGALLQEGLFASITLFLLAWILVYSLAHF

Sequences

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CDS sequence

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ATGAAAGAAGCAAAACCGGTTAAGTTCAATCTTCATCAGCATCAAGATCATCAGAATGGTCATTTGGCTCCATTCAAGCTCGCTAAATTAATCGATCCAGAAGCCTCATG
GGACAAGGACCAACTGGGAGATGTTTTGCACTGGATTCGACAAGCAGTGGCCGTTATACTTGGACTGTTGTGGGGATCCATACCTTTGGTTGGAGGCATTTGGTTTTTAA
TTTTCTTGGCGATATCAACCAGTGTTGTATATGGATACTATGCAATGATATTAAAAGTCGATGAAGAAGAATTTGGAGGCCATGGAGCTCTCCTCCAAGAGGGCCTTTTT
GCTTCTATAACTCTCTTTCTGCTTGCTTGGATTCTCGTATACAGTCTGGCACACTTTTGA

mRNA sequence

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Protein sequence

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MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLF
ASITLFLLAWILVYSLAHF

Cucsat.G5558 (gene) of Cucumber (B10) v3 genome