; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G5571 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G5571
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionTHO complex subunit 4A-like
Genome locationctg1296:118880..122850
RNA-Seq ExpressionCucsat.G5571
SyntenyCucsat.G5571
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061942.1 THO complex subunit 4A-like isoform X1 [Cucumis melo var. makuwa]1.55e-14597.7Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKV
         GFGRGRGRGRGPSEK+
Subjt:  HGFGRGRGRGRGPSEKV

XP_004143092.1 THO complex subunit 4A [Cucumis sativus]2.66e-165100Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
        HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

XP_008448384.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo]6.02e-16298.31Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
         GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

XP_022947495.1 THO complex subunit 4A-like [Cucurbita moschata]1.81e-14591.6Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQHDMF D  +GF VQ GRAS+IQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKR+GIHYDKSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN NGAPRRQQGRGG PSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  -HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
          G GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  -HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

XP_038901991.1 THO complex subunit 4A-like [Benincasa hispida]8.20e-16097.47Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADP SGF  QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKR+GIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN NGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
         GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

TrEMBL top hitse value%identityAlignment
A0A0A0KBU2 RRM domain-containing protein1.29e-165100Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
        HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

A0A1S3BK70 THO complex subunit 4A-like isoform X12.91e-16298.31Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
         GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

A0A5A7V158 THO complex subunit 4A-like isoform X17.48e-14697.7Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKV
         GFGRGRGRGRGPSEK+
Subjt:  HGFGRGRGRGRGPSEKV

A0A6J1G721 THO complex subunit 4A-like8.74e-14691.6Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQHDMF D  +GF VQ GRAS+IQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKR+GIHYDKSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN NGAPRRQQGRGG PSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  -HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
          G GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  -HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

A0A6J1L1M6 THO complex subunit 4A-like3.56e-14591.18Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQHDMF D  +GF VQ GRAS+IQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKR+GIHYDKSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN NG PRRQQGRGG PSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  -HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
          G GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  -HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

SwissProt top hitse value%identityAlignment
O08583 THO complex subunit 44.6e-4143.41Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPNRA-------ANR-TPYSAPKAPETTWQHDMFADPSSGFLV
        MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P  A        NR  PYS PK     WQHD+F    SGF  
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPNRA-------ANR-TPYSAPKAPETTWQHDMFADPSSGFLV

Query:  QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTA
          G  + ++TG KL +SNLD+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+PM I++V + I T    P  
Subjt:  QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTA

Query:  AVNPFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHA
        ++N    +        G GG     RG   GRGRG GR   +++SAE+LDA L+ Y+A
Subjt:  AVNPFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHA

Q3T0I4 THO complex subunit 47.9e-4143.4Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPNRA--------ANR-TPYSAPKAPETTWQHDMFADPSSGFL
        MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P  A         NR  PYS PK     WQHD+F    SGF 
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPNRA--------ANR-TPYSAPKAPETTWQHDMFADPSSGFL

Query:  VQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPT
           G  + ++TG KL +SNLD+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+PM I++V + I T    P 
Subjt:  VQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPT

Query:  AAVNPFENSNGAPRRQQGR------GGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHA
         +VN      G   R +G       GG     RG   GRGRG GR   +++SAE+LDA L+ Y+A
Subjt:  AAVNPFENSNGAPRRQQGR------GGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHA

Q6NQ72 THO complex subunit 4D3.2e-4242.32Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGN---SRGRGR-----GSGPGPVRRFPNRAANRTPYS------APKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTK
        M+  L+M+LD+I+K  K +RSG    SRGRGR     G G GP RR P  A N  P S        +     WQ  +F D      ++   AS ++ GT+
Subjt:  MAAPLDMSLDDIIKNNKKSRSGN---SRGRGR-----GSGPGPVRRFPNRAANRTPYS------APKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTK

Query:  LYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV-----------------
        L+++NLD GV+NEDI+ELFSE+G+++R+ IHYDK+GR  GTAEVV+ RR DA  A+KKYNNV LDG+PM++EI+G N S+ A                  
Subjt:  LYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV-----------------

Query:  ----------------------GPTAAVN---PFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEK---VSAEDLDADLEKYHAESM
                              GP   V+   P  N  G   R  GRGG  +R RG+G GRGRG GRG  +K    SA DLD DLE YHA++M
Subjt:  ----------------------GPTAAVN---PFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEK---VSAEDLDADLEKYHAESM

Q8L719 THO complex subunit 4B1.4e-6154.83Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR
        M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT PYS P    +A +  WQ+D+FA  +S     G       G 
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR

Query:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVN-
         S+I+TGTKLYISNLDYGVSNEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKIEIVGTN+S PA+   A    
Subjt:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVN-

Query:  PF----------ENSNG-------APRRQQGRGGPPSRQRGHGFG----------RGRG----RGRGPSEKVSAEDLDADLEKYHAESMQ
        PF          EN NG          R +GRGG   R RG GFG          RGRG     GRG  E VSAEDLDA+L+KYH E+M+
Subjt:  PF----------ENSNG-------APRRQQGRGGPPSRQRGHGFG----------RGRG----RGRGPSEKVSAEDLDADLEKYHAESMQ

Q8L773 THO complex subunit 4A1.1e-6962.95Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP-RRQQGRGGP
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP R  QGRGG 
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP-RRQQGRGGP

Query:  PSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
          +QRG         G GRGR  G+GP+EK+SAEDLDADL+KYH+  M+ N
Subjt:  PSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

Arabidopsis top hitse value%identityAlignment
AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein9.9e-6354.83Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR
        M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT PYS P    +A +  WQ+D+FA  +S     G       G 
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR

Query:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVN-
         S+I+TGTKLYISNLDYGVSNEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKIEIVGTN+S PA+   A    
Subjt:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVN-

Query:  PF----------ENSNG-------APRRQQGRGGPPSRQRGHGFG----------RGRG----RGRGPSEKVSAEDLDADLEKYHAESMQ
        PF          EN NG          R +GRGG   R RG GFG          RGRG     GRG  E VSAEDLDA+L+KYH E+M+
Subjt:  PF----------ENSNG-------APRRQQGRGGPPSRQRGHGFG----------RGRG----RGRGPSEKVSAEDLDADLEKYHAESMQ

AT5G02530.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.9e-6254.86Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR
        M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT PYS P    +A +  WQ+D+FA  +S     G       G 
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR

Query:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVN-
         S+I+TGTKLYISNLDYGVSNEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKIEIVGTN+S PA+   A    
Subjt:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVN-

Query:  PF----------ENSNGAPRRQ-----QGRGGPPSRQRGHGFG----------RGRG----RGRGPSEKVSAEDLDADLEKYHAESMQ
        PF          EN NG          +GRGG   R RG GFG          RGRG     GRG  E VSAEDLDA+L+KYH E+M+
Subjt:  PF----------ENSNGAPRRQ-----QGRGGPPSRQRGHGFG----------RGRG----RGRGPSEKVSAEDLDADLEKYHAESMQ

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.5e-7162.95Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP-RRQQGRGGP
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP R  QGRGG 
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP-RRQQGRGGP

Query:  PSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
          +QRG         G GRGR  G+GP+EK+SAEDLDADL+KYH+  M+ N
Subjt:  PSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

AT5G59950.3 RNA-binding (RRM/RBD/RNP motifs) family protein7.1e-6962.55Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY +  APE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP-RRQQGRGGP
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP R  QGRGG 
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP-RRQQGRGGP

Query:  PSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
          +QRG         G GRGR  G+GP+EK+SAEDLDADL+KYH+  M+ N
Subjt:  PSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein9.9e-7162.7Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP--RRQQGRGG
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP  R  QGRGG
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP--RRQQGRGG

Query:  PPSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
           +QRG         G GRGR  G+GP+EK+SAEDLDADL+KYH+  M+ N
Subjt:  PPSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGAGGAAGAGGTTCTGGACCTGGTCCCGTCCG
TAGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTTCTGGTGC
AAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTATCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGAT
ATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTAAAGAAGTACAACAA
CGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGG
CTCCGAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCATGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCCCTAGTGAAAAGGTTTCTGCTGAA
GATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGAGGAAGAGGTTCTGGACCTGGTCCCGTCCG
TAGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTTCTGGTGC
AAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTATCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGAT
ATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTAAAGAAGTACAACAA
CGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGG
CTCCGAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCATGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCCCTAGTGAAAAGGTTTCTGCTGAA
GATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG
Protein sequenceShow/hide protein sequence
MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGD
MKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAE
DLDADLEKYHAESMQIN