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Cucsat.G5807 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G5807
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationctg1402:264289..266011
RNA-Seq ExpressionCucsat.G5807
SyntenyCucsat.G5807
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047513.1 hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa]1.96e-4056.52Show/hide
Query:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI
        M+ +P+PLFAEY V R+HI  VSL  LH AL  G+T+++L I ++EEQN I L FE S  S +P+ R++ F VPMEDWS G + FD K FSIES+LF DI
Subjt:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI

Query:  ITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEE
        I  F  +NE D ILIT+ GSKV+FSV  PF E  +TEE
Subjt:  ITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEE

KAE8652085.1 hypothetical protein Csa_018729, partial [Cucumis sativus]3.79e-4555.24Show/hide
Query:  SPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEENGECLILGDRQVVSELHMPLHP
        S +P+ R++ F VPMEDWS  +++FD K FSIES LF DII  F  + E +TILI S GSKVSFS+L PF E  +TEE+G CLI GDR++ +++ MPL P
Subjt:  SPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEENGECLILGDRQVVSELHMPLHP

Query:  SSFFLNFPYEARRVWFFKSNDSYA-IIKFPFHVHPHFLMVRFP
        SSFF N   +++RVWFF+S DS    I FPF V+PHFL++  P
Subjt:  SSFFLNFPYEARRVWFFKSNDSYA-IIKFPFHVHPHFLMVRFP

KGN45637.1 hypothetical protein Csa_005027 [Cucumis sativus]6.78e-108100Show/hide
Query:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
        MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
Subjt:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII

Query:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDT
        CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDT
Subjt:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDT

KGN61523.1 hypothetical protein Csa_006491 [Cucumis sativus]1.41e-3766.36Show/hide
Query:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
        MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF EY V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I
Subjt:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII

Query:  CLAFEPS
           FEPS
Subjt:  CLAFEPS

XP_031736681.1 uncharacterized protein LOC116402062 [Cucumis sativus]2.08e-9056.35Show/hide
Query:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
        MFSIKID +DP LDA  LF ++ +D+ICLKF  ST SII RY+ P FF  + +P+PLF EY V R+HI R+SLLS ++AL   QT+++L IHLQE+QN I
Subjt:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII

Query:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEENGECLILGDRQVV
         L FEPS  S +P+ R++ F VPMEDWS  +++FD K FSIES LF DII  F  + E +TILI S GSKVSFS+L PF E  +TEE+G CLI GDR++ 
Subjt:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEENGECLILGDRQVV

Query:  SELHMPLHPSSFFLNFPYEARRVWFFKSNDSYA-IIKFPFHVHPHFLMVRFP
        +++ MPL PSSFF N   +++RVWFF+S DS    I FPF V+PHFL++  P
Subjt:  SELHMPLHPSSFFLNFPYEARRVWFFKSNDSYA-IIKFPFHVHPHFLMVRFP

TrEMBL top hitse value%identityAlignment
A0A0A0KB76 Uncharacterized protein3.28e-108100Show/hide
Query:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
        MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
Subjt:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII

Query:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDT
        CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDT
Subjt:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDT

A0A0A0LIE0 Uncharacterized protein6.81e-3866.36Show/hide
Query:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
        MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF EY V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I
Subjt:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII

Query:  CLAFEPS
           FEPS
Subjt:  CLAFEPS

A0A5A7TVD7 Uncharacterized protein9.47e-4156.52Show/hide
Query:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI
        M+ +P+PLFAEY V R+HI  VSL  LH AL  G+T+++L I ++EEQN I L FE S  S +P+ R++ F VPMEDWS G + FD K FSIES+LF DI
Subjt:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI

Query:  ITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEE
        I  F  +NE D ILIT+ GSKV+FSV  PF E  +TEE
Subjt:  ITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEE

A0A5D3DSC2 Uncharacterized protein3.19e-3756.52Show/hide
Query:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI
        M+ +P+PLFAEY V R+HI  VSL  LH AL  G+T+++L I ++EEQN I L FE S  S +P+ R++ F VPMEDWS G + FD K FSIES+LF DI
Subjt:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI

Query:  ITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEE
        I  F  +NE D ILIT+ GSKV+FSV  PF E  +TEE
Subjt:  ITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEE

A0A6J1H2Z8 uncharacterized protein LOC1114600114.88e-3437.24Show/hide
Query:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
        MF +++   DPL++A S+   I N+   LKFS S FS+I  Y    F A   I    FA YFV R+H  RVSL S + A+  G  +SS+ IH  E  + +
Subjt:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII

Query:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEENGECLILG-DRQV
         L FE S H+ + M R ++   P ++   G+I  D + FSI S  FRDIIT    +   ++I ++   S+V F   +   E I+T+E G C+I+G + Q 
Subjt:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEENGECLILG-DRQV

Query:  VSELHMPLHPSSFFLNFPYEARRVWFFKSNDSYAIIKFP
             + L+P  FF N  Y A R+WF+K+ DS  +I  P
Subjt:  VSELHMPLHPSSFFLNFPYEARRVWFFKSNDSYAIIKFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCTATCAAGATTGACAAACTTGATCCTCTCTTGGATGCAATCTCCCTCTTCACCGATATCGTAAACGACAAAATCTGCCTGAAATTCTCGCTGTCGACGTTCTC
AATAATTGCTCGGTACCAACACCCTTTCTTCTTTGCAATGTTGTTTATACCGGAACCGTTGTTCGCCGAGTATTTCGTTGGCCGGGATCACATTTTAAGGGTTTCCCTCC
TGTCCTTGCACACTGCTTTGGCAAGAGGTCAAACCTATTCCTCATTGAGAATCCATCTTCAAGAAGAACAGAATATTATATGTCTTGCATTTGAGCCTTCAAGGCATTCA
CCAGTACCAATGCGTCGTAAAATGAGATTCGAAGTGCCTATGGAAGATTGGTCTGCTGGAGAAATTGACTTTGATGCAAAGAGTTTCTCCATTGAGTCAGATTTGTTTAG
AGATATTATAACAACATTTTATGATTACAATGAAGTTGATACAATTTTGATTACTTCTGTGGGTTCAAAAGTCTCATTCTCTGTTCTTAATCCATTTCACGAAGTTATTA
TTACTGAAGAGAATGGAGAGTGTTTGATTTTAGGTGATAGACAAGTTGTGAGTGAATTGCATATGCCTCTTCATCCATCCTCATTTTTCCTCAATTTCCCTTATGAAGCT
CGAAGGGTATGGTTCTTCAAATCAAATGATTCTTATGCAATAATCAAATTTCCTTTTCATGTCCATCCTCATTTTTTGATGGTCCGTTTTCCAGCGTTGCAAGAGTTGGA
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCTATCAAGATTGACAAACTTGATCCTCTCTTGGATGCAATCTCCCTCTTCACCGATATCGTAAACGACAAAATCTGCCTGAAATTCTCGCTGTCGACGTTCTC
AATAATTGCTCGGTACCAACACCCTTTCTTCTTTGCAATGTTGTTTATACCGGAACCGTTGTTCGCCGAGTATTTCGTTGGCCGGGATCACATTTTAAGGGTTTCCCTCC
TGTCCTTGCACACTGCTTTGGCAAGAGGTCAAACCTATTCCTCATTGAGAATCCATCTTCAAGAAGAACAGAATATTATATGTCTTGCATTTGAGCCTTCAAGGCATTCA
CCAGTACCAATGCGTCGTAAAATGAGATTCGAAGTGCCTATGGAAGATTGGTCTGCTGGAGAAATTGACTTTGATGCAAAGAGTTTCTCCATTGAGTCAGATTTGTTTAG
AGATATTATAACAACATTTTATGATTACAATGAAGTTGATACAATTTTGATTACTTCTGTGGGTTCAAAAGTCTCATTCTCTGTTCTTAATCCATTTCACGAAGTTATTA
TTACTGAAGAGAATGGAGAGTGTTTGATTTTAGGTGATAGACAAGTTGTGAGTGAATTGCATATGCCTCTTCATCCATCCTCATTTTTCCTCAATTTCCCTTATGAAGCT
CGAAGGGTATGGTTCTTCAAATCAAATGATTCTTATGCAATAATCAAATTTCCTTTTCATGTCCATCCTCATTTTTTGATGGTCCGTTTTCCAGCGTTGCAAGAGTTGGA
TTGA
Protein sequenceShow/hide protein sequence
MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHS
PVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTILITSVGSKVSFSVLNPFHEVIITEENGECLILGDRQVVSELHMPLHPSSFFLNFPYEA
RRVWFFKSNDSYAIIKFPFHVHPHFLMVRFPALQELD