CuGenDBv2

Gene ID	Cucsat.G5873
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	RRM domain-containing protein
Genome location	ctg1402:1400426..1402987
RNA-Seq Expression	Cucsat.G5873
Synteny	Cucsat.G5873
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004138411.1 uncharacterized protein LOC101221287 [Cucumis sativus]

7.46e-135

100

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

XP_008441485.1 PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]

1.55e-127

93.97

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
         EMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVMADGTARRLAK+YNMR+SDD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

XP_023004840.1 uncharacterized protein LOC111498019 [Cucurbita maxima]

1.28e-110

81.91

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRP+KPGRKISF WL  +DPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LKGNYKKYEI++ VM DGTARRLA+ YNMR++DD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

XP_023514768.1 uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]

3.15e-111

82.91

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRP+KPGRKISF WL  DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM DGTARRLA+ YNMR++DD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

XP_038886330.1 uncharacterized protein LOC120076542 [Benincasa hispida]

1.59e-120

89.45

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQFAMFEEKVKRTVYVDNLS  VTEPVLRTALDQFGTVVSVHFIPNYTEPIN+SQCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRPVKPGRKISF WLE DDPDFEVA+++K L++KHVAEAAFL+K H+AEEEKLAKQQQE LKGNYKKYEIV+SVMADGTARRLAK YNMR+SDD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

3.61e-135

100

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

A0A1S3B3J3 uncharacterized protein LOC103485592

7.51e-128

93.97

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
         EMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVMADGTARRLAK+YNMR+SDD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

A0A6J1DB90 uncharacterized protein LOC111018537

6.61e-106

78.89

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS  +EQFA FEEKVKRTVYVDNLS QVTEPV+RTALDQFGTVV V FIPNY EP+NSSQCALVEMKD KEAKSVI+VIA+FPFM+SGMPRPVRARPAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRP+KPG KISF WL+ +DPDF+VA+++K  ++KH AE AFL+KQ + EEEKLAKQQQE LKGNYKK+EIV+SVM DGTARRLAK Y+MR+ DD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

A0A6J1H6P8 uncharacterized protein LOC111460615

1.78e-110

81.91

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+  FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRP+KPGRKISF WL  DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM DGTARRLA+ YNMR++DD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

A0A6J1KVQ1 uncharacterized protein LOC111498019

6.21e-111

81.91

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRP+KPGRKISF WL  +DPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LKGNYKKYEI++ VM DGTARRLA+ YNMR++DD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

4.9e-47

47.18

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        M + ++  +  F E+V+RTVYVD L+   T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMR
          MF D+P KPGR + FRW++ +DPDF+ AR++KRL++KH AE +F++K  + E EKL+KQQ ET   ++KK+E++D ++ DG A++LA  Y+++
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

1.5e-48

47.18

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        M + ++  +  F E+V+RTVYVD L+   T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMR
          MF D+P KPGR + FRW++ +DPDF+ AR++KRL++KH AE +F++K+ + E EKL+KQQ ET   ++KK+E++D ++ DG A++LA  Y+++
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMR

Sequences

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CDS sequence

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ATGGGATCGGAGAAGGATGAGCAATTTGCCATGTTTGAAGAGAAGGTTAAACGGACTGTGTATGTTGATAATCTCTCTCTTCAAGTAACTGAGCCTGTTTTGAGAACTGC
TTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAACAGCTCTCAATGTGCTCTAGTGGAAATGAAGGATTCGAAGGAGGCGA
AATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTAAAG
CCTGGTAGAAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTTCTAAGAAACATGTGGCTGAAGCTGCATTTTT
GGTCAAGCAACATATGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACACTGAAAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAA
CTGCCCGCAGGTTAGCAAAACATTATAATATGCGAATTTCAGATGATTAA

mRNA sequence

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Protein sequence

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MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVK
PGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

Cucsat.G5873 (gene) of Cucumber (B10) v3 genome