CuGenDBv2

Gene ID	Cucsat.G6100
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X2
Genome location	ctg1425:2329407..2332160
RNA-Seq Expression	Cucsat.G6100
Synteny	Cucsat.G6100
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039964.1 protein SPA [Cucumis melo var. makuwa]

6.19e-59

90.82

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Query:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
        MAAR TPIIL A+QLKATDSNGVTPS NS  LPRLSI KPSWIVRTESNVRREK KKPDPPCVICNGSGRVDCHHCCGRGRTNFV LEMLPKGEWPKW
Subjt:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW

XP_004153696.1 uncharacterized protein LOC101214526 [Cucumis sativus]

1.32e-67

100

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Query:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
        MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
Subjt:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW

XP_008460069.1 PREDICTED: uncharacterized protein LOC103498991 [Cucumis melo]

3.24e-61

91.84

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Query:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
        MAAR TPIILPA+QLKATDSNGVTPS NS +LPRLSI KPSWIVRTESNVRREK KKPDPPCVICNGSGRVDCHHCCGRGRTNFV LEMLPKGEWPKW
Subjt:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW

XP_023513705.1 uncharacterized protein LOC111778233 [Cucurbita pepo subsp. pepo]

1.55e-55

84.69

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Query:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
        MAAR TPI+LPA+QLKATDSNGV P  NS   PRLSI KPSWIVRTESNVRREK KKPDPPC IC+GSGRVDCH CCGRGRTNFV LEMLPKGEWPKW
Subjt:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW

XP_038906930.1 uncharacterized protein LOC120092800 [Benincasa hispida]

4.85e-57

86.73

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Query:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
        MAA  TPI+LPA+QLKATDSNGVTP  NS  LPRLSI KPSWIVRTESNVRREK KKPDPPCVICNGSGRVDCHHCCGRGRTNFV LEMLPKG+WP+W
Subjt:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBQ1 Uncharacterized protein

6.40e-68

100

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Query:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
        MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
Subjt:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW

A0A1S3CCX7 uncharacterized protein LOC103498991

1.57e-61

91.84

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Query:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
        MAAR TPIILPA+QLKATDSNGVTPS NS +LPRLSI KPSWIVRTESNVRREK KKPDPPCVICNGSGRVDCHHCCGRGRTNFV LEMLPKGEWPKW
Subjt:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW

A0A5D3DLS3 Protein SPA

3.00e-59

90.82

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Query:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
        MAAR TPIIL A+QLKATDSNGVTPS NS  LPRLSI KPSWIVRTESNVRREK KKPDPPCVICNGSGRVDCHHCCGRGRTNFV LEMLPKGEWPKW
Subjt:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW

A0A6J1HHM2 uncharacterized protein LOC111464401

1.75e-54

83.67

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Query:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
        MAAR TPI+LPA+QLKATDSNGV P  NS   PRLSI KPSWIVRTESNVRREK KKPDPPC IC+GSGRVDCH CCGRGRTN V LEMLPKGEWPKW
Subjt:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW

A0A6J1KM14 uncharacterized protein LOC111494509

5.00e-54

82.65

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Query:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
        MAA  T I+LPA+QLKATDSNGV P  NS   PRLSI KPSWIVRTESNVRREK KKPDPPC IC+GSGRVDCH+CCGRGRTNFV LEMLPKGEWPKW
Subjt:  MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G17668.1 DnaJ/Hsp40 cysteine-rich domain superfamily protein

2.7e-22

52.27

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Query:  PALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW
        P   +      GV  S ++    RL ++KPSWIVRT+S  +     K    CVIC+GSGRVDC +CCG+GRTN VD+EMLP+GEWPKW
Subjt:  PALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKW

Sequences

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CDS sequence

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ATGGCAGCGAGAGCAACGCCGATTATTCTTCCAGCTCTTCAATTGAAAGCCACAGACTCAAATGGCGTAACTCCTTCTGGGAATTCAATCTTTCTTCCTCGTCTATCAAT
TTCAAAGCCTTCTTGGATCGTCAGAACAGAGTCAAATGTTAGAAGAGAAAAAATAAAGAAGCCAGATCCACCTTGTGTGATATGCAACGGAAGTGGTAGAGTTGACTGTC
ACCATTGTTGTGGAAGAGGGAGGACAAATTTTGTTGACTTAGAAATGCTTCCAAAAGGGGAATGGCCAAAATGGTACGAGTGTTTGTCATATTTCCTTTCTCCTACTCAT
AACTTCGTAAACGTTCTCTCTTTTCACATCACCAAAACTTGGTATCAAATAAACTGCCGTCAATTACTATTGCAGGTGCAGGACTTGTGGAGGGAGTGGTCTTGGCTACT
GCTCCCGTTGCCTTGGGACGGGAGAGTATCGATATATTATGGGGTTCCAATTCATGAAGATGGAGAATGA

mRNA sequence

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Protein sequence

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MAARATPIILPALQLKATDSNGVTPSGNSIFLPRLSISKPSWIVRTESNVRREKIKKPDPPCVICNGSGRVDCHHCCGRGRTNFVDLEMLPKGEWPKWYECLSYFLSPTH
NFVNVLSFHITKTWYQINCRQLLLQVQDLWREWSWLLLPLPWDGRVSIYYGVPIHEDGE

Cucsat.G6100 (gene) of Cucumber (B10) v3 genome