CuGenDBv2

Gene ID	Cucsat.G6105
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	ctg1425:2401165..2402019
RNA-Seq Expression	Cucsat.G6105
Synteny	Cucsat.G6105
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004812 - aminoacyl-tRNA ligase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037551.1 putative mitochondrial protein [Cucumis melo var. makuwa]

5.36e-67

87.4

Show/hide

Query:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
        MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR +RKHRHILDSVRALLL  SCPEKFWGEAALTSVYTINRLPSSVLQN SP
Subjt:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP

Query:  FKKLYGISPDYSKLKVFGSACFVLLHP
        F+KLYG  P+YS LK FG ACFVLLHP
Subjt:  FKKLYGISPDYSKLKVFGSACFVLLHP

KAA0064888.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.29e-69

88.98

Show/hide

Query:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
        MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILDSVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SP
Subjt:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP

Query:  FKKLYGISPDYSKLKVFGSACFVLLHP
        F+KLYG  P+YS LK FG ACFVLLHP
Subjt:  FKKLYGISPDYSKLKVFGSACFVLLHP

TYK03707.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.50e-67

87.4

Show/hide

Query:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
        MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILDSVRA LL ASCPEKFWGEAALTSVYTIN LPSSVLQN SP
Subjt:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP

Query:  FKKLYGISPDYSKLKVFGSACFVLLHP
        F++LYG  P+YS LKVFG ACFVLLHP
Subjt:  FKKLYGISPDYSKLKVFGSACFVLLHP

TYK15021.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.07e-69

89.76

Show/hide

Query:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
        MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILDSVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SP
Subjt:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP

Query:  FKKLYGISPDYSKLKVFGSACFVLLHP
        F+KLYG  P+YS LKVFG ACFVLLHP
Subjt:  FKKLYGISPDYSKLKVFGSACFVLLHP

XP_031745067.1 uncharacterized protein LOC116405245 [Cucumis sativus]

1.82e-77

97.64

Show/hide

Query:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
        MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGR ERKHRHILDSVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
Subjt:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP

Query:  FKKLYGISPDYSKLKVFGSACFVLLHP
        F+KLYGISPDYSKLKVFGSACFVLLHP
Subjt:  FKKLYGISPDYSKLKVFGSACFVLLHP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SI12 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.93e-67

88.19

Show/hide

Query:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
        MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILDSVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SP
Subjt:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP

Query:  FKKLYGISPDYSKLKVFGSACFVLLHP
        F++LYG  P+YS LKVFG ACFVLL P
Subjt:  FKKLYGISPDYSKLKVFGSACFVLLHP

A0A5A7VBA1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.08e-69

88.98

Show/hide

Query:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
        MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILDSVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SP
Subjt:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP

Query:  FKKLYGISPDYSKLKVFGSACFVLLHP
        F+KLYG  P+YS LK FG ACFVLLHP
Subjt:  FKKLYGISPDYSKLKVFGSACFVLLHP

A0A5D3BTS2 Putative mitochondrial protein

2.60e-67

87.4

Show/hide

Query:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
        MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR +RKHRHILDSVRALLL  SCPEKFWGEAALTSVYTINRLPSSVLQN SP
Subjt:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP

Query:  FKKLYGISPDYSKLKVFGSACFVLLHP
        F+KLYG  P+YS LK FG ACFVLLHP
Subjt:  FKKLYGISPDYSKLKVFGSACFVLLHP

A0A5D3BW28 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.26e-68

87.4

Show/hide

Query:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
        MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILDSVRA LL ASCPEKFWGEAALTSVYTIN LPSSVLQN SP
Subjt:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP

Query:  FKKLYGISPDYSKLKVFGSACFVLLHP
        F++LYG  P+YS LKVFG ACFVLLHP
Subjt:  FKKLYGISPDYSKLKVFGSACFVLLHP

A0A5D3CT53 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.45e-69

89.76

Show/hide

Query:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
        MIRTQFS PIK LRTDNALEYKDS LLSFLSQQGT+VQRSCPHTSQQNGR ERKHRHILDSVRALLL ASCPEKFWGEAALTSVYTINRLPSSVLQN SP
Subjt:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP

Query:  FKKLYGISPDYSKLKVFGSACFVLLHP
        F+KLYG  P+YS LKVFG ACFVLLHP
Subjt:  FKKLYGISPDYSKLKVFGSACFVLLHP

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.3e-13

Show/hide

Query:  FSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTS--PFKK
        F+  +  L  DN  EY  + +  F  ++G     + PHT Q NG  ER  R I +  R ++  A   + FWGEA LT+ Y INR+PS  L ++S  P++ 
Subjt:  FSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTS--PFKK

Query:  LYGISPDYSKLKVFGSACFV
         +   P    L+VFG+  +V
Subjt:  LYGISPDYSKLKVFGSACFV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

5.2e-23

44.09

Show/hide

Query:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
        ++  +F + I    +DN  E+    L  + SQ G     S PHT + NG  ERKHRHI+++   LL  AS P+ +W  A   +VY INRLP+ +LQ  SP
Subjt:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP

Query:  FKKLYGISPDYSKLKVFGSACFVLLHP
        F+KL+G SP+Y KL+VFG AC+  L P
Subjt:  FKKLYGISPDYSKLKVFGSACFVLLHP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.4e-23

45.67

Show/hide

Query:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP
        ++  +F + I  L +DN  E+   +L  +LSQ G     S PHT + NG  ERKHRHI++    LL  AS P+ +W  A   +VY INRLP+ +LQ  SP
Subjt:  MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSP

Query:  FKKLYGISPDYSKLKVFGSACFVLLHP
        F+KL+G  P+Y KLKVFG AC+  L P
Subjt:  FKKLYGISPDYSKLKVFGSACFVLLHP

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATTCGCACTCAATTTTCCTCTCCCATCAAAATTCTTCGCACCGATAATGCTTTGGAATATAAAGATTCCATCCTTCTTTCTTTTCTTTCCCAACAGGGCACTATTGT
TCAGCGCTCTTGCCCTCATACCTCTCAACAAAATGGACGTGTTGAGCGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTCCTTTTTGCCTCTTGTCCAGAAA
AATTCTGGGGTGAAGCTGCCCTTACATCAGTATATACAATCAATCGTCTCCCTTCTTCTGTTCTTCAAAACACCTCTCCATTTAAAAAACTATACGGTATCTCTCCCGAC
TATTCTAAACTCAAAGTTTTTGGTAGTGCATGCTTCGTTCTTTTACATCCT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MIRTQFSSPIKILRTDNALEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRVERKHRHILDSVRALLLFASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFKKLYGISPD
YSKLKVFGSACFVLLHP

Cucsat.G6105 (gene) of Cucumber (B10) v3 genome