CuGenDBv2

Gene ID	Cucsat.G6210
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	U6 snRNA-associated Sm-like protein LSm3
Genome location	ctg1425:1356698..1357792
RNA-Seq Expression	Cucsat.G6210
Synteny	Cucsat.G6210
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0033962 - cytoplasmic mRNA processing body assembly (biological process) GO:0000932 - P-body (cellular component) GO:0005688 - U6 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:1990726 - Lsm1-7-Pat1 complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR040002 - U6 snRNA-associated Sm-like protein Lsm3

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6526104.1 hypothetical protein ZIOFF_016081 [Zingiber officinale]

2.33e-16

81.82

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSLSLYHLS
        MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHV          LYHLS
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSLSLYHLS

THU62820.1 hypothetical protein C4D60_Mb01t09150 [Musa balbisiana]

5.16e-18

80.77

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSLSLY
        MA+EEES VKEPLDL+RLSLDERIYVKLRSDRELRGKLHVH   L L+L +Y
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSLSLY

XP_008441520.1 PREDICTED: sm-like protein LSM3B [Cucumis melo]

9.72e-16

88.89

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL
        MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH +   L
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL

XP_022133461.1 sm-like protein LSM3A [Momordica charantia]

9.72e-16

88.89

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL
        MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH +   L
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL

XP_042459108.1 sm-like protein LSM3A [Zingiber officinale]

9.72e-16

88.89

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL
        MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH +   L
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K8S0 U6 snRNA-associated Sm-like protein LSm3

4.70e-16

88.89

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL
        MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH +   L
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL

A0A4S8JL82 Uncharacterized protein

2.50e-18

80.77

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSLSLY
        MA+EEES VKEPLDL+RLSLDERIYVKLRSDRELRGKLHVH   L L+L +Y
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSLSLY

A0A5D3DHH3 U6 snRNA-associated Sm-like protein LSm3

4.70e-16

88.89

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL
        MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH +   L
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL

A0A6J1FGZ1 U6 snRNA-associated Sm-like protein LSm3

4.70e-16

88.89

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL
        MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH +   L
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL

A0A6J1JZX1 U6 snRNA-associated Sm-like protein LSm3

4.70e-16

88.89

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL
        MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH +   L
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKL

SwissProt top hits

e value

%identity

Alignment

P62310 U6 snRNA-associated Sm-like protein LSm3

8.7e-09

69.77

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Query:  STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSL
        +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LH +   L + L
Subjt:  STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSL

Q1ZXK3 Probable U6 snRNA-associated Sm-like protein LSm3

3.5e-10

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSLS
        M   EE TV+EPLDLIRLSLDERI+VK+R DRELRGKLH +   L + LS
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSLS

Q32PE9 U6 snRNA-associated Sm-like protein LSm3

8.7e-09

69.77

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Query:  STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSL
        +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LH +   L + L
Subjt:  STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSL

Q9C6K5 Sm-like protein LSM3B

1.4e-11

75.51

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSL
        M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLH     L + L
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSL

Q9LMN4 Sm-like protein LSM3A

9.3e-11

69.39

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSL
        M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLH     L + L
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSL

Arabidopsis top hits

e value

%identity

Alignment

AT1G21190.1 Small nuclear ribonucleoprotein family protein

6.6e-12

69.39

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSL
        M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLH     L + L
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSL

AT1G76860.1 Small nuclear ribonucleoprotein family protein

1.0e-12

75.51

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Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSL
        M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLH     L + L
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSL

Sequences

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CDS sequence

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ATGGTTGAGAAAAAGAAAAAAAAAGGAAAAAGAATAGGAACTAAAAACAAACGTGGATCGGGTCGGGTCAACAAAGAGAGCATTGGGGAATTGGGGTTGGCATTTTGTTT
TGGGGATCGGAAAACTCATAAACCCCAACTCGTCAGTTTGCGATTTCAGAGCTTCCAACACCACCCAAAAATGGCCACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGG
ATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGTACATCCTCCCAAATTACTTCTCTCTTTATCC
CTTTATCATCTTTCTTTCTTTTCTCTAATTATTATGTCTCTCTCTATCTCTCTGTCCTCTTTAATTGACAACCCCCCAATTGTTATTGTTTTTTCTTTCGATCAAATTAA
TGTCTTGGAGAATTAG

mRNA sequence

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Protein sequence

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MVEKKKKKGKRIGTKNKRGSGRVNKESIGELGLAFCFGDRKTHKPQLVSLRFQSFQHHPKMATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVHPPKLLLSLS
LYHLSFFSLIIMSLSISLSSLIDNPPIVIVFSFDQINVLEN

Cucsat.G6210 (gene) of Cucumber (B10) v3 genome