CuGenDBv2

Gene ID	Cucsat.G6239
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Phosphorylated adapter RNA export protein
Genome location	ctg1425:2038801..2043074
RNA-Seq Expression	Cucsat.G6239
Synteny	Cucsat.G6239
Gene Ontology terms	GO:0006408 - snRNA export from nucleus (biological process) GO:0015031 - protein transport (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019385 - Phosphorylated adapter RNA export protein, RNA-binding domain IPR038092 - Phosphorylated adapter RNA export protein, RNA-binding domain superfamily IPR039047 - Phosphorylated adapter RNA export protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040009.1 uncharacterized protein E6C27_scaffold122G002920 [Cucumis melo var. makuwa]

2.67e-157

94.49

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Query:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM
        MDG ENILEAIYE D+ ENDDVEMADVEEGEFID NINIEKSSFTDVQAPSTDQRSKNRK RTKKKKNKRKSSEPGSNGTDINRFVL+ACR LKEKKSYM
Subjt:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM

Query:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG-SS
        VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREATETEKESSQKVPHLFSEG SS
Subjt:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG-SS

Query:  RNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT
        RNLPDHVQSF+SELN+SKESNSEEK SSIHDRLRVP+SYDDDLLQENPKEEDTT
Subjt:  RNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT

XP_004144996.1 uncharacterized protein LOC101205280 isoform X1 [Cucumis sativus]

3.60e-174

100

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Query:  MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKK
        MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKK
Subjt:  MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKK

Query:  SYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG
        SYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG
Subjt:  SYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG

Query:  SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTTDCR
        SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTTDCR
Subjt:  SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTTDCR

XP_008460135.1 PREDICTED: uncharacterized protein LOC103499036 [Cucumis melo]

3.79e-157

94.49

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Query:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM
        MDGQENILEAIYE D+ ENDDVEMADVEEGEFID NINIEKSSFTDVQAPSTDQRSKNRK RTKKKKNKRKSSEPGSNGTDINRFVL+ACR LKEKKSYM
Subjt:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM

Query:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG-SS
        VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREA ETEKESSQKVPHLFSEG SS
Subjt:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG-SS

Query:  RNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT
        RNLPDHVQSF+SELN+SKESNSEEK SSIHDRLRVP+SYDDDLLQENPKEEDTT
Subjt:  RNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT

XP_023547831.1 uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo]

1.59e-139

84.58

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Query:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM
        MDGQENILEAIYE+D LENDDVEM DVEEGEF++ NI+ EKSS TDVQAPS D RSKNRK R+KKKKNKRK+ E GSNGTDINRFVL+ACR LKEKKSYM
Subjt:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM

Query:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEGSSR
        VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREATE  K SSQ+V HLFSEG+S+
Subjt:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEGSSR

Query:  NLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT
        + PD +QS + E NQSKESNSEEK SS+H+RLRVPVSYDDD+L+ENPKEEDTT
Subjt:  NLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT

XP_031744074.1 uncharacterized protein LOC101205280 isoform X2 [Cucumis sativus]

6.75e-166

97.3

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Query:  MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKK
        MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDIN       RLLKEKK
Subjt:  MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKK

Query:  SYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG
        SYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG
Subjt:  SYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG

Query:  SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTTDCR
        SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTTDCR
Subjt:  SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTTDCR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBJ7 Phosphorylated adapter RNA export protein

1.74e-174

100

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Query:  MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKK
        MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKK
Subjt:  MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKK

Query:  SYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG
        SYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG
Subjt:  SYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG

Query:  SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTTDCR
        SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTTDCR
Subjt:  SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTTDCR

A0A1S3CD38 Phosphorylated adapter RNA export protein

1.83e-157

94.49

Show/hide

Query:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM
        MDGQENILEAIYE D+ ENDDVEMADVEEGEFID NINIEKSSFTDVQAPSTDQRSKNRK RTKKKKNKRKSSEPGSNGTDINRFVL+ACR LKEKKSYM
Subjt:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM

Query:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG-SS
        VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREA ETEKESSQKVPHLFSEG SS
Subjt:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG-SS

Query:  RNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT
        RNLPDHVQSF+SELN+SKESNSEEK SSIHDRLRVP+SYDDDLLQENPKEEDTT
Subjt:  RNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT

A0A5D3DLH5 Phosphorylated adapter RNA export protein

1.29e-157

94.49

Show/hide

Query:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM
        MDG ENILEAIYE D+ ENDDVEMADVEEGEFID NINIEKSSFTDVQAPSTDQRSKNRK RTKKKKNKRKSSEPGSNGTDINRFVL+ACR LKEKKSYM
Subjt:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM

Query:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG-SS
        VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREATETEKESSQKVPHLFSEG SS
Subjt:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEG-SS

Query:  RNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT
        RNLPDHVQSF+SELN+SKESNSEEK SSIHDRLRVP+SYDDDLLQENPKEEDTT
Subjt:  RNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT

A0A6J1H592 Phosphorylated adapter RNA export protein

1.81e-138

83.79

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Query:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM
        MDGQENILEAIYE+D LENDDVEM DVEEGEF++ NI+ EKSS TDVQAPS D +SKNRK R+KKKKNKRK+ E GSNGTDINRFVL+ACR LKEKKSYM
Subjt:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM

Query:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEGSSR
        VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREATE  K SSQ V HLFSEG+S+
Subjt:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEGSSR

Query:  NLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT
        + PD +QS + E NQSKESNSEEK SS+H+RLRVPVSYDDD+L+ENPKEEDT+
Subjt:  NLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT

A0A6J1KUZ4 Phosphorylated adapter RNA export protein

5.76e-135

82.61

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Query:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM
        MDGQENILEAIYE+D LENDDVEM DVEEGE ++ NI+ EKSS TDVQAPS D RSKNRK R+KKKKNKRK+ E GSNGTDINRFVL+ACR LKEKKSYM
Subjt:  MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYM

Query:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEGSSR
        VYTAVGCLGVSALSE IKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREATE  K SSQ+V HLFS+G+S+
Subjt:  VYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEGSSR

Query:  NLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT
        + PD +QS +   NQSKESNSEEK SS+ +RLRVPVSYDDD+L+ENPKEEDTT
Subjt:  NLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G20430.1 CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

1.1e-46

43.94

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Query:  MDGQENILEAIYEDDKLEN-DDVEMADVEEGEFIDDN-------INIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEP-GSNGTDINRFVLNACR
        M+G+E++L+AI E+D  EN +DVEM DVEEGE + D+        N +     D +A   ++    + ++ K+KK K+K   P       ++ FV + CR
Subjt:  MDGQENILEAIYEDDKLEN-DDVEMADVEEGEFIDDN-------INIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEP-GSNGTDINRFVLNACR

Query:  LLKEKKSYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVP
         LKEKKSYM+YTAVGCLG++ALS+L+ EV A++ CGGQ+TADG R RT GG+LW+IIK R+P AY+EIMK+ KEFEKQF+QPN R ++     + S    
Subjt:  LLKEKKSYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVP

Query:  HLFSEGSSRNLPDHVQSFSSEL-----NQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEE
           SEG +       ++  SE+      +  ES  E++  S+H+R+RVPVSY DDL ++ P ++
Subjt:  HLFSEGSSRNLPDHVQSFSSEL-----NQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTATCTTATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGACGATAAGTTGGAAAATGATGATGTTGAAATGGCCGATGTGGAGGAAGGGGAGTTCATTGA
CGACAATATCAATATAGAGAAAAGCAGTTTTACAGATGTCCAAGCACCAAGTACGGATCAGAGAAGTAAAAATCGTAAACATCGGACAAAGAAAAAGAAGAACAAAAGAA
AGTCAAGCGAGCCAGGTTCAAATGGCACTGATATAAACAGGTTTGTGTTGAATGCATGCAGACTTTTGAAAGAGAAAAAATCGTACATGGTGTACACTGCTGTAGGTTGT
CTTGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTCAATGCAGTTCAAGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGCTTTCGGACGGGAGGTGGCATATT
ATGGAGCATCATCAAAACCCGGGAACCAAATGCCTACAAAGAGATAATGAAACGTGCAAAAGAGTTTGAGAAACAATTTAAGCAACCAAATGTGAGAAGGGAGGCTACAG
AAACTGAGAAAGAAAGTTCTCAAAAAGTTCCTCACCTTTTCTCTGAAGGATCTTCTAGAAATCTGCCAGATCACGTCCAAAGCTTTTCTTCAGAGCTGAATCAATCTAAG
GAATCAAATTCCGAAGAAAAACTGTCTTCTATTCACGATAGATTAAGAGTACCAGTTTCATATGATGATGACCTCCTTCAAGAAAATCCGAAAGAGGAAGATACAACTGA
CTGTAGATAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYMVYTAVGC
LGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSK
ESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTTDCR

Cucsat.G6239 (gene) of Cucumber (B10) v3 genome