; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G6248 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G6248
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionSWIB domain-containing protein
Genome locationctg1425:2222789..2225278
RNA-Seq ExpressionCucsat.G6248
SyntenyCucsat.G6248
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593745.1 hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia]1.10e-5871.23Show/hide
Query:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK
        MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  LK S AA S +KS+   KK  N SGG+LK+ +VSP LAGFLG SE +R EAVKQIW+YIK
Subjt:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK

Query:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG
        LNNLQNP +KRQI CD KLKAIF GRE VG+LEI K LS HFVKS 
Subjt:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG

XP_004154030.1 upstream activation factor subunit UAF30 isoform X1 [Cucumis sativus]2.73e-9399.32Show/hide
Query:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK
        MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIW YIK
Subjt:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK

Query:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG
        LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG
Subjt:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG

XP_008460088.1 PREDICTED: protein TRI1-like [Cucumis melo]1.88e-7582.88Show/hide
Query:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK
        MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+  N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW+YIK
Subjt:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK

Query:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG
        LNNLQN TDKRQI CDAKLKAIFGGREKVGMLEI KFLS HFVKSG
Subjt:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG

XP_031743273.1 upstream activation factor subunit spp27 isoform X2 [Cucumis sativus]3.72e-6196.33Show/hide
Query:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK
        MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIW YIK
Subjt:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK

Query:  LNNLQNPTD
        LNNLQ+  D
Subjt:  LNNLQNPTD

XP_038906873.1 upstream activation factor subunit spp27-like [Benincasa hispida]3.78e-6173.97Show/hide
Query:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK
        MASG  NGTRFF+GCRTL DSLKSTTQAYSSTP VS+K  LK S  AVSGQKS   PKKV N S G+ K+  VSP LAGFLG SE +R+EAVKQIWAYIK
Subjt:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK

Query:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG
        LNNLQ+P DKRQI CD KLKAIF GREKVG LEI K L+ HFVKS 
Subjt:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG

TrEMBL top hitse value%identityAlignment
A0A0A0KCY9 SWIB domain-containing protein1.32e-9399.32Show/hide
Query:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK
        MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIW YIK
Subjt:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK

Query:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG
        LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG
Subjt:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG

A0A1S3CBA0 protein TRI1-like9.08e-7682.88Show/hide
Query:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK
        MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+  N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW+YIK
Subjt:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK

Query:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG
        LNNLQN TDKRQI CDAKLKAIFGGREKVGMLEI KFLS HFVKSG
Subjt:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG

A0A5D3DMJ2 Protein TRI1-like9.08e-7682.88Show/hide
Query:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK
        MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+  N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW+YIK
Subjt:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK

Query:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG
        LNNLQN TDKRQI CDAKLKAIFGGREKVGMLEI KFLS HFVKSG
Subjt:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG

A0A6J1KEZ2 upstream activation factor subunit spp27-like1.77e-5769.18Show/hide
Query:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK
        MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  LK S AA + +KS+   KK  N SGG+ K+ +VSP LAGFLG SE +R+EAVKQIW+YIK
Subjt:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK

Query:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG
        LN+LQNP +KRQI CD KLKAIF GRE VG+LEI K LS HFVKS 
Subjt:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG

A0A6J1KHF5 upstream activation factor subunit spp27-like6.18e-5869.86Show/hide
Query:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK
        MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  LK S AA S +KS+   KK  N SGG+ K+ +VSP LAGFLG SE +R+EAVKQIW+YIK
Subjt:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK

Query:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG
        LN+LQNP +KRQI CD KLKAIF GRE VG+LEI K LS HFVKS 
Subjt:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp271.5e-1043.68Show/hide
Query:  SKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIF
        +K T K       G K K       NP   L K  K+SP LA FLG  +++R + VK++W YIK ++LQ+P DKR I+CD KLK++F
Subjt:  SKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIF

Q05024 Protein TRI19.6e-1344.21Show/hide
Query:  SGQKSKPAPKKVANPSGGLLKTQKV--SPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIH
        S  KSK   KK  +P    +  +KV  S  L  FLG  E+ RT+ VK IW YIK ++LQNP D+R+I+CD K++ IFG  +K+ M  + K L+ H
Subjt:  SGQKSKPAPKKVANPSGGLLKTQKV--SPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIH

Q08747 Upstream activation factor subunit UAF306.2e-1237.12Show/hide
Query:  RTLLDSLK-STTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKV--SPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQ
        R+L D LK + T A   T  ++            S  K     KK    S   + T+KV  S +LA  LG+ E+ RTE V+++WAYIK +NLQNP +K++
Subjt:  RTLLDSLK-STTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKV--SPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQ

Query:  IICDAKLKAIFGGREKVGMLEIPKFLSIHFVK
        I+CD KL+ I G  +   M E+ K L+ H  +
Subjt:  IICDAKLKAIFGGREKVGMLEIPKFLSIHFVK

Q2TBN1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 12.8e-0435.82Show/hide
Query:  KVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFL
        K+ P LA  LG     R   ++ +W YIK + LQ+P ++  +ICD  L+ IF   +++   EIP+ L
Subjt:  KVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFL

Q9SIV5 Zinc finger CCCH domain-containing protein 191.6e-0438.71Show/hide
Query:  QSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVK
        +S +   E    + AYIK  NL++P  K Q+ICD++L+ +F G+  VG  E+   L  HF+K
Subjt:  QSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVK

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein5.8e-2153.49Show/hide
Query:  VANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKS
        VA    G+ KT+ VS  LA F G+ E+ R  A+K++W Y+KL+NLQNP +K++I CD KLK IF G++KVG+ EI K LS HF KS
Subjt:  VANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKS

AT2G14880.1 SWIB/MDM2 domain superfamily protein7.8e-1839.26Show/hide
Query:  TRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPT
        T  F+   T L SL+     ++S P    +  ++  T+A    +     K+V     G++K + VSP +   +   EIART+A+K+IWAYIK ++LQ+P 
Subjt:  TRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPT

Query:  DKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFV
        +KR+I+CD KLK IF GR++VG LEI K +  HF+
Subjt:  DKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein2.1e-2357.47Show/hide
Query:  KVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKS
        K      G+LK   VS  LA F+G++E++RT AVK+IW YIKLNNLQNP +KR+I+CD +LK IF G++ VG LEI K LS HF KS
Subjt:  KVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKS

AT3G03590.1 SWIB/MDM2 domain superfamily protein1.9e-2448.15Show/hide
Query:  FKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSK-PAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDK
        F+G R+LL      T +  S  G + K   KP   A    K+K  +P K    S G+ K   VSP LA FLG  E +RT+A+K IW YIK ++LQNP DK
Subjt:  FKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSK-PAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDK

Query:  RQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKS
        R+I CD  LK IF G++KVG LEI K LS HFVK+
Subjt:  RQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKS

AT4G34290.1 SWIB/MDM2 domain superfamily protein8.6e-1735.66Show/hide
Query:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK
        ++SG+ + T        L  S+ S +    S    ++   ++  T+A +         K   P  G++K + VS  +   +G  EI RT+A+K+IWAYIK
Subjt:  MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIK

Query:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFV
         ++LQ+P +KR I+CD KLK IF G+E+VG LEI K +  HF+
Subjt:  LNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAAAGGCTGCAGAACTCTCTTAGATTCTCTCAAATCCACCACTCAAGCTTACTCTTCTACTCCTGGGGTCTCTTC
CAAGAGTACCCTAAAACCCTCAACTGCTGCCGTTTCGGGCCAAAAGTCGAAACCCGCACCAAAGAAAGTGGCGAATCCTTCGGGCGGGCTTTTGAAAACCCAGAAAGTTT
CTCCGACTCTCGCTGGCTTCCTCGGCCAGTCCGAGATTGCGCGCACTGAAGCCGTCAAGCAAATATGGGCGTACATCAAGCTGAATAACCTCCAGAACCCAACTGATAAG
AGGCAGATCATTTGTGATGCAAAGCTGAAGGCTATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTCCAAAATTTCTATCCATTCATTTTGTGAAATCTGGTTA
A
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAAAGGCTGCAGAACTCTCTTAGATTCTCTCAAATCCACCACTCAAGCTTACTCTTCTACTCCTGGGGTCTCTTC
CAAGAGTACCCTAAAACCCTCAACTGCTGCCGTTTCGGGCCAAAAGTCGAAACCCGCACCAAAGAAAGTGGCGAATCCTTCGGGCGGGCTTTTGAAAACCCAGAAAGTTT
CTCCGACTCTCGCTGGCTTCCTCGGCCAGTCCGAGATTGCGCGCACTGAAGCCGTCAAGCAAATATGGGCGTACATCAAGCTGAATAACCTCCAGAACCCAACTGATAAG
AGGCAGATCATTTGTGATGCAAAGCTGAAGGCTATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTCCAAAATTTCTATCCATTCATTTTGTGAAATCTGGTTA
A
Protein sequenceShow/hide protein sequence
MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDK
RQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG