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Cucsat.G6270 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G6270
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationctg1425:2567081..2567905
RNA-Seq ExpressionCucsat.G6270
SyntenyCucsat.G6270
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.08e-3647.06Show/hide
Query:  RKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKST
        +++P   LSPN C +C +  E+I+H+FI C  ++ LW+K + LL W +   +V SL   +CS+  RN++G+I FNT A++LW +WLERNNRIFK +EK+ 
Subjt:  RKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKST

Query:  IDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF
         DLWED L+  GLW+ K  +F+N    SIA+N+S F
Subjt:  IDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.72e-3646.32Show/hide
Query:  RKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKST
        +++P   LSPN C +C +  E+I+H+FI C  ++ LW+K + LL W +   +V SL   +CS+  + ++G+I FNTIA +LW +WLERNNRIFK ++K  
Subjt:  RKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKST

Query:  IDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF
         DLWEDIL+ +GLW+ K  +F+N    SIA+N+S F
Subjt:  IDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.67e-3646.32Show/hide
Query:  RKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKST
        +++P   LSPN C +C +  E+I+H+FI C  ++ LW+K + LL W +   +V SL   +CS+  + ++G+I FNTIA +LW +WLERNNRIFK ++K  
Subjt:  RKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKST

Query:  IDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF
         DLWEDIL+ +GLW+ K  +F+N    SIA+N+S F
Subjt:  IDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF

TYK13741.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.34e-3746.72Show/hide
Query:  MRKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKS
        M+++P L   P+ C +CKR+ E+  H+FI C  AK +W  +   L       +   LC  +CS KQ+ K+ +I FNT AS LW +WLERN RIF GKEK+
Subjt:  MRKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKS

Query:  TIDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF
          ++WEDI +L+GLW S+ S+F+N  ASSIA+NL+ F
Subjt:  TIDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF

TYK14764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.68e-3746.72Show/hide
Query:  MRKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKS
        M+++P L   P+ C +CKR+ E+  H+FI C  AK +W  +   L       +   LC  +CS KQ+ K+ +I FNT AS LW +WLERN RIF GKEK+
Subjt:  MRKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKS

Query:  TIDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF
          ++WEDI +L+GLW S+ S+F+N  ASSIA+NL+ F
Subjt:  TIDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein5.25e-3747.06Show/hide
Query:  RKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKST
        +++P   LSPN C +C +  E+I+H+FI C  ++ LW+K + LL W +   +V SL   +CS+  RN++G+I FNT A++LW +WLERNNRIFK +EK+ 
Subjt:  RKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKST

Query:  IDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF
         DLWED L+  GLW+ K  +F+N    SIA+N+S F
Subjt:  IDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.80e-3646.32Show/hide
Query:  RKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKST
        +++P   LSPN C +C +  E+I+H+FI C  ++ LW+K + LL W +   +V SL   +CS+  + ++G+I FNTIA +LW +WLERNNRIFK ++K  
Subjt:  RKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKST

Query:  IDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF
         DLWEDIL+ +GLW+ K  +F+N    SIA+N+S F
Subjt:  IDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.78e-3646.32Show/hide
Query:  RKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKST
        +++P   LSPN C +C +  E+I+H+FI C  ++ LW+K + LL W +   +V SL   +CS+  + ++G+I FNTIA +LW +WLERNNRIFK ++K  
Subjt:  RKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKST

Query:  IDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF
         DLWEDIL+ +GLW+ K  +F+N    SIA+N+S F
Subjt:  IDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF

A0A5D3CPL6 LINE-1 retrotransposable element ORF2 protein2.10e-3746.72Show/hide
Query:  MRKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKS
        M+++P L   P+ C +CKR+ E+  H+FI C  AK +W  +   L       +   LC  +CS KQ+ K+ +I FNT AS LW +WLERN RIF GKEK+
Subjt:  MRKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKS

Query:  TIDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF
          ++WEDI +L+GLW S+ S+F+N  ASSIA+NL+ F
Subjt:  TIDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF

A0A5D3CUY9 LINE-1 retrotransposable element ORF2 protein4.20e-3746.72Show/hide
Query:  MRKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKS
        M+++P L   P+ C +CKR+ E+  H+FI C  AK +W  +   L       +   LC  +CS KQ+ K+ +I FNT AS LW +WLERN RIF GKEK+
Subjt:  MRKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKS

Query:  TIDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF
          ++WEDI +L+GLW S+ S+F+N  ASSIA+NL+ F
Subjt:  TIDLWEDILSLSGLWASKYSMFANCSASSIAINLSVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.6e-0424.62Show/hide
Query:  CSLCKRHSEEIDHIFIDCHTAKILW------NKLEGLLGWKNQ-QQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKSTIDLWE
        C  C    E ++H+   C  A+++W         EG   W +    N+  + +    I +  K G    N +  +LW LW  RN  +FKGKE    ++  
Subjt:  CSLCKRHSEEIDHIFIDCHTAKILW------NKLEGLLGWKNQ-QQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKSTIDLWE

Query:  DILSLSGLWASKYSMFANCSASSIAINLSV
          +     W+++  +    S   +  NLSV
Subjt:  DILSLSGLWASKYSMFANCSASSIAINLSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAAAGTTCCAACTCTCAATCTGAGTCCAAATCGGTGTTCTTTATGTAAAAGACACTCAGAGGAGATTGATCATATTTTCATAGATTGTCATACTGCCAAAATTCT
ATGGAACAAGCTTGAAGGACTTCTTGGATGGAAAAACCAACAGCAGAATGTTGTTTCCTTATGCTCTTTCCTCTGCTCAATAAAACAACGCAACAAAAGGGGTATCATCT
TTTTTAATACTATTGCATCCGTGTTGTGGATCTTATGGTTGGAGAGAAATAATCGCATTTTCAAGGGCAAGGAAAAATCTACCATTGATCTCTGGGAAGACATCCTTTCT
CTCTCAGGGCTGTGGGCTAGCAAATACTCTATGTTTGCAAATTGTAGTGCTTCCTCTATCGCTATCAATTTAAGTGTTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAAAGTTCCAACTCTCAATCTGAGTCCAAATCGGTGTTCTTTATGTAAAAGACACTCAGAGGAGATTGATCATATTTTCATAGATTGTCATACTGCCAAAATTCT
ATGGAACAAGCTTGAAGGACTTCTTGGATGGAAAAACCAACAGCAGAATGTTGTTTCCTTATGCTCTTTCCTCTGCTCAATAAAACAACGCAACAAAAGGGGTATCATCT
TTTTTAATACTATTGCATCCGTGTTGTGGATCTTATGGTTGGAGAGAAATAATCGCATTTTCAAGGGCAAGGAAAAATCTACCATTGATCTCTGGGAAGACATCCTTTCT
CTCTCAGGGCTGTGGGCTAGCAAATACTCTATGTTTGCAAATTGTAGTGCTTCCTCTATCGCTATCAATTTAAGTGTTTTCTAA
Protein sequenceShow/hide protein sequence
MRKVPTLNLSPNRCSLCKRHSEEIDHIFIDCHTAKILWNKLEGLLGWKNQQQNVVSLCSFLCSIKQRNKRGIIFFNTIASVLWILWLERNNRIFKGKEKSTIDLWEDILS
LSGLWASKYSMFANCSASSIAINLSVF