CuGenDBv2

Gene ID	Cucsat.G6368
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	U2 small nuclear ribonucleoprotein A'
Genome location	ctg1429:315436..320424
RNA-Seq Expression	Cucsat.G6368
Synteny	Cucsat.G6368
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005737 - cytoplasm (cellular component) GO:0015030 - Cajal body (cellular component) GO:0005515 - protein binding (molecular function) GO:0030620 - U2 snRNA binding (molecular function)
InterPro domains	IPR001611 - Leucine-rich repeat IPR003603 - U2A'/phosphoprotein 32 family A, C-terminal IPR032675 - Leucine-rich repeat domain superfamily IPR044640 - U2 small nuclear ribonucleoprotein A'

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140564.3 U2 small nuclear ribonucleoprotein A' [Cucumis sativus]

4.38e-185

100

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE

XP_008459932.1 PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo]

5.70e-181

98.57

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVEKASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTA NITKDKDDKT S SGDEEHVTNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE

XP_022960458.1 U2 small nuclear ribonucleoprotein A' [Cucurbita moschata]

8.40e-171

92.31

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKTMSD GDEE+V+       NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQE

XP_023005060.1 U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]

3.42e-170

91.96

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKT+SD GDEE+V+       NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQE

XP_038907085.1 U2 small nuclear ribonucleoprotein A' [Benincasa hispida]

1.39e-169

92.31

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVK FVPGEVE ASKPVEEKQT NVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQE
        APT EQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLL+DNT  N TK+ DDKTMSDSGDEE+V+       NDE TPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAU7 U2 small nuclear ribonucleoprotein A'

2.76e-181

98.57

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVEKASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTA NITKDKDDKT S SGDEEHVTNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE

A0A6J1D6P1 U2 small nuclear ribonucleoprotein A'

1.78e-167

90.88

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGEVE ASKP EEKQT NVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DD+TMSD  DE++V+       NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQ

A0A6J1H905 U2 small nuclear ribonucleoprotein A'

4.07e-171

92.31

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKTMSD GDEE+V+       NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQE

A0A6J1KWC8 U2 small nuclear ribonucleoprotein A'

1.65e-170

91.96

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKT+SD GDEE+V+       NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQE

E5GB46 U2 small nuclear ribonucleoprotein a

2.76e-181

98.57

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVEKASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTA NITKDKDDKT S SGDEEHVTNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE

SwissProt top hits

e value

%identity

Alignment

P09661 U2 small nuclear ribonucleoprotein A'

1.5e-54

53.78

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVEKASKPVEEKQTPN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVEKASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

P43333 U2 small nuclear ribonucleoprotein A'

4.1e-97

79.92

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLAS+ KLQ+LSLLDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +     EV+K S+  E  +TP V 
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

P57784 U2 small nuclear ribonucleoprotein A'

1.3e-53

53.36

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVEKASKPVEEKQTPN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVEKASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+   + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Q4R8Y8 U2 small nuclear ribonucleoprotein A'

1.5e-54

53.78

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVEKASKPVEEKQTPN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVEKASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Q9BLB6 Probable U2 small nuclear ribonucleoprotein A'

3.3e-46

46.22

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N P  +RL TL ++NNRI  I P+I   LPNL TL LTNN +
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKTFVPGEVEKASKPVEEKQTPN
          L +I+PLA   KL++++ + N IT K NYR+Y+I+KL +VRV+DF +VR  ER  A+ +F  K  ++  +A ++SV T  P E+E       E  +  
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKTFVPGEVEKASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
         +  T E    IK AI N+++L EV  L+  L SG++P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Arabidopsis top hits

e value

%identity

Alignment

AT1G09760.1 U2 small nuclear ribonucleoprotein A

2.9e-98

79.92

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLAS+ KLQ+LSLLDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +     EV+K S+  E  +TP V 
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

Sequences

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CDS sequence

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ATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCT
AGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAACA
ATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCA
TCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTT
CAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGG
TAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTT
GAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATACTGCACAAAACATCACAAAAGACAAAGACGATAA
GACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGAATAA

mRNA sequence

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Protein sequence

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MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLA
SLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTL
EEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE

Cucsat.G6368 (gene) of Cucumber (B10) v3 genome