CuGenDBv2

Gene ID	Cucsat.G6376
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	LITAF domain-containing protein
Genome location	ctg1429:472630..473994
RNA-Seq Expression	Cucsat.G6376
Synteny	Cucsat.G6376
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR006629 - LPS-induced tumour necrosis factor alpha factor IPR037519 - LITAF domain containing protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039847.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa]

7.49e-101

98.51

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDP GVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

XP_004140553.1 GSH-induced LITAF domain protein [Cucumis sativus]

5.47e-103

100

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

XP_008459901.1 PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]

4.34e-100

97.76

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNHEPVVGVPLYVGNNPYQAGQIPPN IFGDP GVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

XP_022991744.1 GSH-induced LITAF domain protein [Cucurbita maxima]

7.22e-90

88.81

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSGLT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP 
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

XP_038906445.1 GSH-induced LITAF domain protein [Benincasa hispida]

1.03e-89

88.81

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+PLY GNNPYQAGQIP NAIFGDP GVPIQQTMYRDTPAPF CVYCGNSGLT +RSKISSAAVVGCM PF+LGVCFL PSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEK+DRCAVMDPP+WTQPS+ALP 
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDG7 LITAF domain-containing protein

2.65e-103

100

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

A0A1S3CCH3 uncharacterized protein LOC103498881

2.10e-100

97.76

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNHEPVVGVPLYVGNNPYQAGQIPPN IFGDP GVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

A0A5D3DMB0 Zf-LITAF-like domain-containing protein

3.62e-101

98.51

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDP GVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

A0A6J1GS01 GSH-induced LITAF domain protein

7.06e-90

88.81

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSGLT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP 
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

A0A6J1JVN9 GSH-induced LITAF domain protein

3.50e-90

88.81

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSGLT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP 
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

SwissProt top hits

e value

%identity

Alignment

Q94CD4 GSH-induced LITAF domain protein

3.4e-57

72.18

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+GVP Y G NPYQAG +PPNAI+GDP G PIQQT+YRDTPAPFNC+YCGN+GLT +RSK   AAVV CMMPFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP
        CP C  KV DFEK D C VMDPP W QPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP

Arabidopsis top hits

e value

%identity

Alignment

AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

2.4e-58

72.18

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+GVP Y G NPYQAG +PPNAI+GDP G PIQQT+YRDTPAPFNC+YCGN+GLT +RSK   AAVV CMMPFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP
        CP C  KV DFEK D C VMDPP W QPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP

Sequences

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CDS sequence

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ATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGT
TCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGATCAAAGATAAGTTCAGCTGCTGTCG
TTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGAT
TTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGA

mRNA sequence

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Protein sequence

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MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGD
FEKLDRCAVMDPPHWTQPSYALPG

Cucsat.G6376 (gene) of Cucumber (B10) v3 genome