; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G648 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G648
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDNA mismatch repair protein
Genome locationctg1:12660059..12665858
RNA-Seq ExpressionCucsat.G648
SyntenyCucsat.G648
Gene Ontology termsGO:0006298 - mismatch repair (biological process)
GO:0006312 - mitotic recombination (biological process)
GO:0007131 - reciprocal meiotic recombination (biological process)
GO:0043570 - maintenance of DNA repeat elements (biological process)
GO:0051096 - positive regulation of helicase activity (biological process)
GO:0032302 - MutSbeta complex (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
GO:0032135 - DNA insertion or deletion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033635.1 DNA mismatch repair protein MSH3 [Cucumis melo var. makuwa]2.27e-7286.67Show/hide
Query:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
        + +FPA A  YHVSYLTSHKNPSLSG KSTEDVTYLYKL+ GVAESSFGFKVAQLAQIPLSCIARATEMG+WLEEIV RRAQ KS E HL E SVKGLEW
Subjt:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW

Query:  QSFQSFLERIDGYEEFFLFLKATVRSADV-GTWCHQIYQARSMAMDLLGR
        QSFQSFLERIDGYEEFF+FLKA VRSADV GT CHQIYQARSMAMDLLGR
Subjt:  QSFQSFLERIDGYEEFFLFLKATVRSADV-GTWCHQIYQARSMAMDLLGR

XP_004140847.3 DNA mismatch repair protein MSH3 isoform X1 [Cucumis sativus]6.98e-8797.32Show/hide
Query:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
        + +FPASAGVYHVSYLTSHK+PSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
Subjt:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW

Query:  QSFQSFLERIDGYEEFFLFLKATVRSADVGTWCHQIYQARSMAMDLLGR
        QSFQSFLERIDGYEEFFLFLKATVRSADVGTWCHQIYQARSMAMDLLGR
Subjt:  QSFQSFLERIDGYEEFFLFLKATVRSADVGTWCHQIYQARSMAMDLLGR

XP_008439212.2 PREDICTED: DNA mismatch repair protein MSH3 [Cucumis melo]1.41e-7488Show/hide
Query:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
        + +FPA A  YHVSYLTSHKNPSLSG KSTEDVTYLYKL+ GVAESSFGFKVAQLAQIPLSCIARATEMG+WLEEIV RRAQ KS E HL E SVKGLEW
Subjt:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW

Query:  QSFQSFLERIDGYEEFFLFLKATVRSADV-GTWCHQIYQARSMAMDLLGR
        QSFQSFLERIDGYEEFFLFLKATVRSADV GTWCHQIYQAR MAMDLLGR
Subjt:  QSFQSFLERIDGYEEFFLFLKATVRSADV-GTWCHQIYQARSMAMDLLGR

XP_022923129.1 DNA mismatch repair protein MSH3 [Cucurbita moschata]4.90e-6076.82Show/hide
Query:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
        + +FPASAGVYHVSYLTSH+ PS SGPKS +DV YLYKL+ G+AESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRK+ E HL EAS KGLE 
Subjt:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW

Query:  QSFQSFLE-RIDGYEEFFLFLKATVRSAD-VGTWCHQIYQARSMAMDLLGR
        +S + FLE RID YEEFFLFLKAT+ S D +G    Q  QARSMAMDLLGR
Subjt:  QSFQSFLE-RIDGYEEFFLFLKATVRSAD-VGTWCHQIYQARSMAMDLLGR

XP_038890123.1 DNA mismatch repair protein MSH3 [Benincasa hispida]1.16e-6880.77Show/hide
Query:  KFPASAGVYHVSYLTSHKNPSLSGPKSTE-DVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEWQ
        +FPAS GVYHVSYLTSHKNPSLSGPKSTE DVTYLYKL+ GVA+SSFGFKVAQLA+IPLSCIARATEMGVWLEE+VTRRA+RKS EQHL EAS KGLEW+
Subjt:  KFPASAGVYHVSYLTSHKNPSLSGPKSTE-DVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEWQ

Query:  SFQSFLE-------RIDGYEEFFLFLKATVRSAD-VGTWCHQIYQARSMAMDLLGR
        SFQ FLE       RID YEEFFLFLKAT+ SAD +G  CHQIYQAR+MAM+LLGR
Subjt:  SFQSFLE-------RIDGYEEFFLFLKATVRSAD-VGTWCHQIYQARSMAMDLLGR

TrEMBL top hitse value%identityAlignment
A0A0A0L5V6 DNA mismatch repair protein3.24e-8797.32Show/hide
Query:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
        + +FPASAGVYHVSYLTSHK+PSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
Subjt:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW

Query:  QSFQSFLERIDGYEEFFLFLKATVRSADVGTWCHQIYQARSMAMDLLGR
        QSFQSFLERIDGYEEFFLFLKATVRSADVGTWCHQIYQARSMAMDLLGR
Subjt:  QSFQSFLERIDGYEEFFLFLKATVRSADVGTWCHQIYQARSMAMDLLGR

A0A1S3AXV2 DNA mismatch repair protein MSH36.83e-7588Show/hide
Query:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
        + +FPA A  YHVSYLTSHKNPSLSG KSTEDVTYLYKL+ GVAESSFGFKVAQLAQIPLSCIARATEMG+WLEEIV RRAQ KS E HL E SVKGLEW
Subjt:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW

Query:  QSFQSFLERIDGYEEFFLFLKATVRSADV-GTWCHQIYQARSMAMDLLGR
        QSFQSFLERIDGYEEFFLFLKATVRSADV GTWCHQIYQAR MAMDLLGR
Subjt:  QSFQSFLERIDGYEEFFLFLKATVRSADV-GTWCHQIYQARSMAMDLLGR

A0A5A7SWU6 DNA mismatch repair protein1.10e-7286.67Show/hide
Query:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
        + +FPA A  YHVSYLTSHKNPSLSG KSTEDVTYLYKL+ GVAESSFGFKVAQLAQIPLSCIARATEMG+WLEEIV RRAQ KS E HL E SVKGLEW
Subjt:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW

Query:  QSFQSFLERIDGYEEFFLFLKATVRSADV-GTWCHQIYQARSMAMDLLGR
        QSFQSFLERIDGYEEFF+FLKA VRSADV GT CHQIYQARSMAMDLLGR
Subjt:  QSFQSFLERIDGYEEFFLFLKATVRSADV-GTWCHQIYQARSMAMDLLGR

A0A6J1E5H0 DNA mismatch repair protein2.37e-6076.82Show/hide
Query:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
        + +FPASAGVYHVSYLTSH+ PS SGPKS +DV YLYKL+ G+AESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRK+ E HL EAS KGLE 
Subjt:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW

Query:  QSFQSFLE-RIDGYEEFFLFLKATVRSAD-VGTWCHQIYQARSMAMDLLGR
        +S + FLE RID YEEFFLFLKAT+ S D +G    Q  QARSMAMDLLGR
Subjt:  QSFQSFLE-RIDGYEEFFLFLKATVRSAD-VGTWCHQIYQARSMAMDLLGR

A0A6J1J5R3 DNA mismatch repair protein3.25e-6076.16Show/hide
Query:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
        + +FPASAGVYHVSYLTSH+ PS SGPKS +DV YLYKL+ G+AESSFGFKVAQLAQIPL CIARATEMGVWLEEIVTRRAQRK+ E HL EAS KGLE 
Subjt:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW

Query:  QSFQSFLE-RIDGYEEFFLFLKATVRSAD-VGTWCHQIYQARSMAMDLLGR
        +S + FLE RID YEEFFLFLKAT+ S D +G    Q  QARSMAMDLLGR
Subjt:  QSFQSFLE-RIDGYEEFFLFLKATVRSAD-VGTWCHQIYQARSMAMDLLGR

SwissProt top hitse value%identityAlignment
O65607 DNA mismatch repair protein MSH36.2e-1642.97Show/hide
Query:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
        SN FP S G YHVSYLT  K+    G    +DVTYLYKL+ G+   SFGFKVAQLAQIP SCI RA  M   LE  V  R +     +       +G E 
Subjt:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW

Query:  QSFQSFLERIDGYEEFFLFLKATVRSAD
               E I    + F  LK  +   D
Subjt:  QSFQSFLERIDGYEEFFLFLKATVRSAD

P13705 DNA mismatch repair protein Msh31.4e-0431.33Show/hide
Query:  FPASAGVYHVSYLTSH---KNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQR
        +P   G YH+ +L +    K  S    +  + VT+LY++  G+A  S+G  VA+LA +P   + +A      LE +V+ R +R
Subjt:  FPASAGVYHVSYLTSH---KNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQR

P26359 DNA mismatch repair protein msh33.8e-0533.33Show/hide
Query:  SFLFFSPTILAYDGWSNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEM
        S+L F     +      +F      +H+ YL S ++   S    ++ +++LYKL+ GVA  S+G  VA++A IP S ++RATE+
Subjt:  SFLFFSPTILAYDGWSNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEM

Q1ZXH0 DNA mismatch repair protein Msh36.9e-0730.36Show/hide
Query:  KFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQ-RKSTEQHLAEASVKGL--E
        ++P   G +H+ YL   ++  L        V +LYKL+ G A++S+G  +A+LA +P+  IA A +    ++E +TRRA      +Q   E  +K +   
Subjt:  KFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQ-RKSTEQHLAEASVKGL--E

Query:  WQSFQSFLERID
        W S ++ L   D
Subjt:  WQSFQSFLERID

Q5B6T1 DNA mismatch repair protein msh31.4e-0440.32Show/hide
Query:  HKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRR
        H   S SG  + ED+T+LY++  GVA  S+G  VA+LA +P   +  A +    LEE + RR
Subjt:  HKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRR

Arabidopsis top hitse value%identityAlignment
AT4G25540.1 homolog of DNA mismatch repair protein MSH34.4e-1742.97Show/hide
Query:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW
        SN FP S G YHVSYLT  K+    G    +DVTYLYKL+ G+   SFGFKVAQLAQIP SCI RA  M   LE  V  R +     +       +G E 
Subjt:  SNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEW

Query:  QSFQSFLERIDGYEEFFLFLKATVRSAD
               E I    + F  LK  +   D
Subjt:  QSFQSFLERIDGYEEFFLFLKATVRSAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCCCTTTCGTTTTGGATCGATGGGTGCTCTGATACCAAGTTGATAGAACCCGACTTCTCAGTTGGCAATGGAAAAGGATACAATATAGGAAATACTGTGGCTAA
TGAAAAATACAGAAGAAAAATAAAAGCTCCCTGTCGAAGACTCCCTCTCTCCCTCGGCTGCCTTCCTATCTCTCAAGGAATAACAGTAGGATTCTTATCACCAAAATTCT
CTGCCCTCTCCCTTCCTTCTCGTCTCTATTTATATTTGCTCCCTCACTCCCCTGCCATGGTGATCGTGCGTCGGCACTCCATTTCCTTGTGGTCCCCACTTGCAGTTGGT
TACATAACCAACTCCTCGTCCTTTTTCTCTTTCCTGTTTTTTTCTCCTACTATACTGGCGTATGATGGGTGGTCTAACAAATTCCCAGCATCTGCGGGGGTATACCATGT
TTCATATCTTACATCACACAAAAATCCAAGCTTGTCAGGCCCAAAATCAACTGAGGATGTGACTTACTTGTATAAGCTCATTTCTGGTGTTGCGGAGAGTAGTTTTGGTT
TCAAAGTAGCACAACTTGCACAGATACCTTTATCGTGTATTGCACGGGCCACAGAAATGGGGGTCTGGTTGGAAGAAATAGTAACAAGAAGAGCACAGCGCAAATCCACA
GAACAACATTTGGCAGAAGCATCAGTTAAGGGATTGGAATGGCAAAGCTTCCAGTCCTTCCTCGAGAGAATTGATGGTTATGAGGAATTCTTTCTATTCTTGAAAGCTAC
AGTACGTTCTGCTGATGTGGGAACATGGTGCCATCAAATTTACCAAGCTAGAAGCATGGCCATGGACTTGTTAGGAAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCCCTTTCGTTTTGGATCGATGGGTGCTCTGATACCAAGTTGATAGAACCCGACTTCTCAGTTGGCAATGGAAAAGGATACAATATAGGAAATACTGTGGCTAA
TGAAAAATACAGAAGAAAAATAAAAGCTCCCTGTCGAAGACTCCCTCTCTCCCTCGGCTGCCTTCCTATCTCTCAAGGAATAACAGTAGGATTCTTATCACCAAAATTCT
CTGCCCTCTCCCTTCCTTCTCGTCTCTATTTATATTTGCTCCCTCACTCCCCTGCCATGGTGATCGTGCGTCGGCACTCCATTTCCTTGTGGTCCCCACTTGCAGTTGGT
TACATAACCAACTCCTCGTCCTTTTTCTCTTTCCTGTTTTTTTCTCCTACTATACTGGCGTATGATGGGTGGTCTAACAAATTCCCAGCATCTGCGGGGGTATACCATGT
TTCATATCTTACATCACACAAAAATCCAAGCTTGTCAGGCCCAAAATCAACTGAGGATGTGACTTACTTGTATAAGCTCATTTCTGGTGTTGCGGAGAGTAGTTTTGGTT
TCAAAGTAGCACAACTTGCACAGATACCTTTATCGTGTATTGCACGGGCCACAGAAATGGGGGTCTGGTTGGAAGAAATAGTAACAAGAAGAGCACAGCGCAAATCCACA
GAACAACATTTGGCAGAAGCATCAGTTAAGGGATTGGAATGGCAAAGCTTCCAGTCCTTCCTCGAGAGAATTGATGGTTATGAGGAATTCTTTCTATTCTTGAAAGCTAC
AGTACGTTCTGCTGATGTGGGAACATGGTGCCATCAAATTTACCAAGCTAGAAGCATGGCCATGGACTTGTTAGGAAGGTGA
Protein sequenceShow/hide protein sequence
MVSLSFWIDGCSDTKLIEPDFSVGNGKGYNIGNTVANEKYRRKIKAPCRRLPLSLGCLPISQGITVGFLSPKFSALSLPSRLYLYLLPHSPAMVIVRRHSISLWSPLAVG
YITNSSSFFSFLFFSPTILAYDGWSNKFPASAGVYHVSYLTSHKNPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKST
EQHLAEASVKGLEWQSFQSFLERIDGYEEFFLFLKATVRSADVGTWCHQIYQARSMAMDLLGR