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Cucsat.G649 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G649
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDNA mismatch repair protein MSH3
Genome locationctg1:12667891..12668603
RNA-Seq ExpressionCucsat.G649
SyntenyCucsat.G649
Gene Ontology termsGO:0006298 - mismatch repair (biological process)
GO:0006312 - mitotic recombination (biological process)
GO:0007131 - reciprocal meiotic recombination (biological process)
GO:0043570 - maintenance of DNA repeat elements (biological process)
GO:0051096 - positive regulation of helicase activity (biological process)
GO:0032302 - MutSbeta complex (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
GO:0032135 - DNA insertion or deletion binding (molecular function)
InterPro domainsIPR036187 - DNA mismatch repair protein MutS, core domain superfamily
IPR045076 - DNA mismatch repair MutS family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033635.1 DNA mismatch repair protein MSH3 [Cucumis melo var. makuwa]9.25e-10197.6Show/hide
Query:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
        RARKEAQSAREKLDALITFYRKQLGMR LEFTSVSGTTHLIELAIDVKVPS+WVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
Subjt:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS

Query:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFV DDEPAQI ICSGRHPVLEGTLQGNFVPND
Subjt:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

XP_004140847.3 DNA mismatch repair protein MSH3 isoform X1 [Cucumis sativus]1.80e-10398.8Show/hide
Query:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
        RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
Subjt:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS

Query:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQI +CSGRHPVLEGTLQGNFVPND
Subjt:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

XP_008439212.2 PREDICTED: DNA mismatch repair protein MSH3 [Cucumis melo]1.80e-10198.2Show/hide
Query:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
        RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPS+WVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
Subjt:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS

Query:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFV DDEPAQI ICSGRHPVLEGTLQGNFVPND
Subjt:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

XP_023552828.1 LOW QUALITY PROTEIN: DNA mismatch repair protein MSH3 [Cucurbita pepo subsp. pepo]1.35e-9491.62Show/hide
Query:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
        RARKEAQSAREKLD+LIT YRKQLGMRKLEF SVSGTTHLIELA+DVKVPS WVKINSTKKT+RYHPPEVLAALDELSLANEELMVASRDAWD FL GFS
Subjt:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS

Query:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        RYYAEFQ+AVQALASIDCLYSLAILSR+KNY RPEFV DDEPAQI ICSGRHPVLE TLQGNFVPND
Subjt:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

XP_031737697.1 DNA mismatch repair protein MSH3 isoform X3 [Cucumis sativus]4.30e-10598.8Show/hide
Query:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
        RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
Subjt:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS

Query:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQI +CSGRHPVLEGTLQGNFVPND
Subjt:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

TrEMBL top hitse value%identityAlignment
A0A0A0L5V6 DNA mismatch repair protein8.25e-10498.8Show/hide
Query:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
        RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
Subjt:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS

Query:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQI +CSGRHPVLEGTLQGNFVPND
Subjt:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

A0A1S3AXV2 DNA mismatch repair protein MSH38.71e-10298.2Show/hide
Query:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
        RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPS+WVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
Subjt:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS

Query:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFV DDEPAQI ICSGRHPVLEGTLQGNFVPND
Subjt:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

A0A5A7SWU6 DNA mismatch repair protein4.48e-10197.6Show/hide
Query:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
        RARKEAQSAREKLDALITFYRKQLGMR LEFTSVSGTTHLIELAIDVKVPS+WVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
Subjt:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS

Query:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFV DDEPAQI ICSGRHPVLEGTLQGNFVPND
Subjt:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

A0A6J1E5H0 DNA mismatch repair protein3.47e-9391.02Show/hide
Query:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
        RARKEAQSAREKLD+LIT YRKQLGMRKLEF SVSGTTHLIELA+DVKVPS WVKINSTKKT+RYHPPEVLAALDELSLANEELMVASRDAWD FL GFS
Subjt:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS

Query:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        RYYAEFQ+AVQALASIDCLYSLAILSR+KNY RPEFV  DEPAQI ICSGRHPVLE TLQGNFVPND
Subjt:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

A0A6J1J5R3 DNA mismatch repair protein1.78e-9491.02Show/hide
Query:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS
        RARKEAQSAREKLD+LIT YRKQLGMRKLEFTSVSGTTHLIELA+DVKVPS WVKINSTKKT+RYHPPEVLAALDELSLANEELMVASR+AWD FL GFS
Subjt:  RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFS

Query:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        RYYAEFQ+AVQALASIDCLYSLAILSR+KNY RPEFV DDEPAQI ICSGRHPVLE T+QGNFVPND
Subjt:  RYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

SwissProt top hitse value%identityAlignment
A2R1F6 DNA mismatch repair protein msh39.9e-2236Show/hide
Query:  KQLGMRKLEFTSVSGTTHLIEL----AIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSRYYAEFQAAVQALASID
        ++LG + +E+ SV+G  +LIE+    A   +VP+ WVK++ TKK  R+H PEV+  + +     E L  A   A+   L   +  Y  F+ +VQALA++D
Subjt:  KQLGMRKLEFTSVSGTTHLIEL----AIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSRYYAEFQAAVQALASID

Query:  CLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        CL +LA ++    Y +PE+    +   I++  GRHP++E  L  ++VPND
Subjt:  CLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

O65607 DNA mismatch repair protein MSH37.8e-5965.06Show/hide
Query:  ARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSR
        AR+     REKLD+ I  +RK+L +R LEF  VSG THLIEL +D KVP  WVK+NSTKKT+RYHPPE++A LDEL+LA E L + +R +WD FL+ FSR
Subjt:  ARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSR

Query:  YYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        YY +F+AAVQALA++DCL+SL+ LSRNKNY RPEFV D EP +I I SGRHPVLE  LQ NFVPND
Subjt:  YYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

Q1ZXH0 DNA mismatch repair protein Msh31.9e-2537.65Show/hide
Query:  RKEAQSAREKLDALITFYRKQLGMRKLEFTSVS--GTTHLIELAIDVK-VPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGF
        +++ +   ++   ++   RK+L    LE+  +   G  +L+EL    K VP  W+K+NST+K  RYH PEVL  L  LS + E L + S+++W  FL  F
Subjt:  RKEAQSAREKLDALITFYRKQLGMRKLEFTSVS--GTTHLIELAIDVK-VPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGF

Query:  SRYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTL---QGNFVPN
        S  Y+ F   V  ++++DCL+SLA +S  + Y RP+FV + +   I+I +GRHPV+E  L    G++VPN
Subjt:  SRYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTL---QGNFVPN

Q2HFD4 DNA mismatch repair protein MSH31.2e-2240.15Show/hide
Query:  FTSVSGTTHLIELA-IDVK-VPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSRYYAEFQAAVQALASIDCLYSLAILSRN
        + +VSG  +LIE+   D+K VP+ W KI+ TKK  R+H PEV+  ++E     E L  A  +A+ D L+  +  Y   + AV +LA++DCL SLA ++  
Subjt:  FTSVSGTTHLIELA-IDVK-VPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSRYYAEFQAAVQALASIDCLYSLAILSRN

Query:  KNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVP
          Y++P F+P   P  I I SGRHP+ E TL   ++P
Subjt:  KNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVP

Q2UT70 DNA mismatch repair protein msh32.2e-2137.16Show/hide
Query:  LGMRKLEFTSVSGTTHLIELAID----VKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSRYYAEFQAAVQALASIDCL
        LG RK+++ +V+G  +LI +        KVP+ WVKI+ TK   R+H PEV+  L +     E L      A+  FL   S  Y  F+ +VQ+LA++DCL
Subjt:  LGMRKLEFTSVSGTTHLIELAID----VKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSRYYAEFQAAVQALASIDCL

Query:  YSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
         SLA ++    Y +PE+        I++  GRHP++E  L  ++VPND
Subjt:  YSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

Arabidopsis top hitse value%identityAlignment
AT3G20475.1 MUTS-homologue 51.9e-0433.78Show/hide
Query:  DFLRGFSRYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        D L     + A    AV  +A +DC+ SLA ++   NY RP    +   + + I +GRH VL+      F+PND
Subjt:  DFLRGFSRYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND

AT4G25540.1 homolog of DNA mismatch repair protein MSH35.5e-6065.06Show/hide
Query:  ARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSR
        AR+     REKLD+ I  +RK+L +R LEF  VSG THLIEL +D KVP  WVK+NSTKKT+RYHPPE++A LDEL+LA E L + +R +WD FL+ FSR
Subjt:  ARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSR

Query:  YYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND
        YY +F+AAVQALA++DCL+SL+ LSRNKNY RPEFV D EP +I I SGRHPVLE  LQ NFVPND
Subjt:  YYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAGCTCGGAAGGAGGCTCAATCTGCAAGAGAGAAATTGGATGCTCTGATCACCTTCTACCGCAAGCAGCTTGGAATGCGGAAGTTGGAGTTCACTAGTGTGTCTGGAAC
TACACATTTGATTGAGCTAGCCATAGATGTAAAGGTGCCTTCACAGTGGGTTAAGATCAATAGTACCAAGAAAACTGTAAGGTATCACCCACCTGAAGTATTGGCTGCAT
TAGATGAGCTATCACTGGCAAATGAAGAGCTCATGGTTGCGTCTCGTGATGCTTGGGATGACTTTCTGAGAGGATTCAGCAGATATTATGCAGAGTTTCAAGCTGCTGTT
CAAGCATTGGCTTCCATAGACTGTCTGTATTCGTTAGCAATCCTCTCAAGAAATAAGAACTATGCTCGCCCAGAGTTTGTACCTGATGATGAACCTGCCCAGATACGTAT
ATGTTCTGGACGCCATCCGGTTTTGGAAGGTACATTACAAGGCAATTTTGTCCCAAACGAC
mRNA sequenceShow/hide mRNA sequence
AGAGCTCGGAAGGAGGCTCAATCTGCAAGAGAGAAATTGGATGCTCTGATCACCTTCTACCGCAAGCAGCTTGGAATGCGGAAGTTGGAGTTCACTAGTGTGTCTGGAAC
TACACATTTGATTGAGCTAGCCATAGATGTAAAGGTGCCTTCACAGTGGGTTAAGATCAATAGTACCAAGAAAACTGTAAGGTATCACCCACCTGAAGTATTGGCTGCAT
TAGATGAGCTATCACTGGCAAATGAAGAGCTCATGGTTGCGTCTCGTGATGCTTGGGATGACTTTCTGAGAGGATTCAGCAGATATTATGCAGAGTTTCAAGCTGCTGTT
CAAGCATTGGCTTCCATAGACTGTCTGTATTCGTTAGCAATCCTCTCAAGAAATAAGAACTATGCTCGCCCAGAGTTTGTACCTGATGATGAACCTGCCCAGATACGTAT
ATGTTCTGGACGCCATCCGGTTTTGGAAGGTACATTACAAGGCAATTTTGTCCCAAACGAC
Protein sequenceShow/hide protein sequence
RARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSRYYAEFQAAV
QALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIRICSGRHPVLEGTLQGNFVPND